RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 PCDHB3Q9Y5E6 796 aa11.35□□□□□ -0.59
HPS4-214ENST00000485842 MDC1Q14676 2089 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 LOC105369274A0A096LPK9 316 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 LOC102723532A0A0G2JNH3 316 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 SYCE1LA8MT33 242 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 ZNF749O43361 778 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 CCNT2O60583 730 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 CDH16O75309 829 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 STK16O75716 305 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 IPO13O94829 963 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 STATHP02808 62 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 MT-ND3P03897 115 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 RBP1P09455 135 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 PYGBP11216 843 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 COL6A2P12110 1019 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 EZRP15311 586 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 HRH2P25021 359 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 CCR8P51685 355 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 CSNK1G2P78368 415 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 GPS2Q13227 327 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 SRSF6Q13247 344 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 CDKL4Q5MAI5 379 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 MANEAQ5SRI9 462 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 CATSPEREQ5SY80 951 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 BROXQ5VW32 411 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 DTX1Q86Y01 620 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 TDRPQ86YL5 185 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 OR4N4Q8N0Y3 316 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 MREGQ8N565 214 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 ESX1Q8N693 406 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 TTC29Q8NA56 475 aaPredicted RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 MZB1Q8WU39 189 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 MR1Q95460 341 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 NKD1Q969G9 470 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 NEIL2Q969S2 332 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 NDC1Q9BTX1 674 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 DPH1Q9BZG8 443 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 TXLNGQ9NUQ3 528 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 DNAJC11Q9NVH1 559 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 XPR1Q9UBH6 696 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 PTBP2Q9UKA9 531 aaKnown RBP11.34□□□□□ -0.59
HPS4-214ENST00000485842 PLAAQ9Y263 795 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 ASB1Q9Y576 335 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 KCNE2Q9Y6J6 123 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 AP1M2Q9Y6Q5 423 aa11.34□□□□□ -0.59
HPS4-214ENST00000485842 A0A087WV48 116 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 LOC101059948A0A1B0GTJ6 334 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 A0A1W2PPM1 405 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 FEZF1A0PJY2 475 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 CCDC189A1A4V9 331 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 H0YGG7 62 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 TK2O00142 265 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 HBQ1P09105 142 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 CCNYL3P0C7X3 344 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 MTHFD2P13995 350 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 GRK3P35626 688 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 STAT5AP42229 794 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 AGTR2P50052 363 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 ARF3P61204 181 aaPredicted RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 TLE3Q04726 772 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 CDC16Q13042 620 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 MAP7Q14244 749 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 PDK4Q16654 411 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 PFKFB4Q16877 469 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 TCTE1Q5JU00 501 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 WASHC2DQ5SRD0 308 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 C1orf189Q5VU69 101 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 FBXO42Q6P3S6 717 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 TLDC1Q6P9B6 456 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 KLHDC8AQ8IYD2 350 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 CYP4X1Q8N118 509 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 CSNK1A1LQ8N752 337 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 SLC38A9Q8NBW4 561 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 ACMSDQ8TDX5 336 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 HNRNPLLQ8WVV9 542 aaKnown RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 RERGQ96A58 199 aaPredicted RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 KIAA1143Q96AT1 154 aaPredicted RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 CD244Q9BZW8 370 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 SPNS1Q9H2V7 528 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 SYNPO2LQ9H987 977 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 GPN2Q9H9Y4 310 aaPredicted RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 OPTCQ9UBM4 332 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 DHCR7Q9UBM7 475 aaKnown RBP11.33□□□□□ -0.6
HPS4-214ENST00000485842 NDOR1Q9UHB4 597 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 SRPK3Q9UPE1 567 aa11.33□□□□□ -0.6
HPS4-214ENST00000485842 ANKRD11Q6UB99 2663 aaPredicted RBP11.32□□□□□ -0.6
HPS4-214ENST00000485842 FREM2Q5SZK8 3169 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 H3BMH7 237 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 MAP2K7O14733 419 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 CLGNO14967 610 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 P2RX6O15547 441 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 SRPX2O60687 465 aaPredicted RBP11.32□□□□□ -0.6
HPS4-214ENST00000485842 SMIM24O75264 130 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 ERLIN1O75477 346 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 KLK3P07288 261 aaPredicted RBP11.32□□□□□ -0.6
HPS4-214ENST00000485842 VARSP26640 1264 aaKnown RBP11.32□□□□□ -0.6
HPS4-214ENST00000485842 GGT5P36269 586 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 BCL6P41182 706 aa11.32□□□□□ -0.6
HPS4-214ENST00000485842 ALDH18A1P54886 795 aaKnown RBP11.32□□□□□ -0.6
HPS4-214ENST00000485842 RPS15AP62244 130 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms