RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 NUDT9Q9BW91 350 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 ATG10Q9H0Y0 220 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 SLC26A1Q9H2B4 701 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 SOX17Q9H6I2 414 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-203ENST00000474056 SMYD2Q9NRG4 433 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 UTP6Q9NYH9 597 aaKnown RBP17.11■□□□□ 0.33
UPF3A-203ENST00000474056 GRHL1Q9NZI5 618 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 WHRNQ9P202 907 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 SH2B3Q9UQQ2 575 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 RUVBL1Q9Y265 456 aaKnown RBP17.11■□□□□ 0.33
UPF3A-203ENST00000474056 SCN2AQ99250 2005 aa17.11■□□□□ 0.33
UPF3A-203ENST00000474056 FAM95CA0A1B0GW59 222 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 A6NL46 340 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 P2RX6O15547 441 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 PIAS1O75925 651 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 PGDP52209 483 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 MUM1Q2TAK8 710 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 AGTRAPQ6RW13 159 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 SHISA6Q6ZSJ9 500 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 STRA8Q7Z7C7 330 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 CSNK1A1LQ8N752 337 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 TEX19Q8NA77 164 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 CABS1Q96KC9 395 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 WDR54Q9H977 334 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 ZNF304Q9HCX3 659 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 SAYSD1Q9NPB0 183 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 P4HTMQ9NXG6 502 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 IKZF3Q9UKT9 509 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 MYO18BQ8IUG5 2567 aa17.1■□□□□ 0.33
UPF3A-203ENST00000474056 CNTRLQ7Z7A1 2325 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 TENM4Q6N022 2769 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 PEX12O00623 359 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 ZNF37AP17032 561 aaPredicted RBP17.09■□□□□ 0.33
UPF3A-203ENST00000474056 SAT1P21673 171 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 SSTR1P30872 391 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 NAE1Q13564 534 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 RAPSNQ13702 412 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 ZNF460Q14592 562 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 ZXDCQ2QGD7 858 aaPredicted RBP17.09■□□□□ 0.33
UPF3A-203ENST00000474056 DCAF10Q5QP82 559 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 PRMT9Q6P2P2 845 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 SLC26A11Q86WA9 606 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 ARHGEF39Q8N4T4 335 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 PYROXD1Q8WU10 500 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 RERGQ96A58 199 aaPredicted RBP17.09■□□□□ 0.33
UPF3A-203ENST00000474056 COL26A1Q96A83 441 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 ALKBH8Q96BT7 664 aaKnown RBP17.09■□□□□ 0.33
UPF3A-203ENST00000474056 TMEM184CQ9NVA4 438 aa17.09■□□□□ 0.33
UPF3A-203ENST00000474056 SHANK1Q9Y566 2161 aa17.08■□□□□ 0.33
UPF3A-203ENST00000474056 VSTM2BA6NLU5 285 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 STATHP02808 62 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 HIST1H2AGP0C0S8 130 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-203ENST00000474056 HIST1H2ADP20671 130 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 MMP11P24347 488 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 EMP3P54852 163 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 SNRPNP63162 240 aaKnown RBP17.08■□□□□ 0.32
UPF3A-203ENST00000474056 RELAQ04206 551 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 LCTLQ6UWM7 567 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 HIST1H2AHQ96KK5 128 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 FER1L6-AS2Q96M78 137 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 HIST1H2AJQ99878 128 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 MCMBPQ9BTE3 642 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 H2AFJQ9BTM1 129 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 SGPP1Q9BX95 441 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 GPR83Q9NYM4 423 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 CDC23Q9UJX2 597 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 NXT1Q9UKK6 140 aaKnown RBP17.08■□□□□ 0.32
UPF3A-203ENST00000474056 HS3ST3B1Q9Y662 390 aa17.08■□□□□ 0.32
UPF3A-203ENST00000474056 CXorf49A8MYA2 514 aaPredicted RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 AGPSO00116 658 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 SOCS6O14544 535 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 FFAR3O14843 346 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 EIF3HO15372 352 aaKnown RBP eCLIP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 GPR42O15529 346 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 ALOX12BO75342 701 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 FBLP22087 321 aaKnown RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 CSRP3P50461 194 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 TAS2R39P59534 338 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 CSNK1G2P78368 415 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 TRADDQ15628 312 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 NADK2Q4G0N4 442 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 SBSNQ6UWP8 590 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 ZNF572Q7Z3I7 529 aaPredicted RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 VN1R4Q7Z5H5 301 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 C17orf64Q86WR6 236 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 PRSS58Q8IYP2 241 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 GALNT16Q8N428 558 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 CLEC1AQ8NC01 280 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 STT3BQ8TCJ2 826 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 PYCR2Q96C36 320 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 PDLIM5Q96HC4 596 aaKnown RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 VPS39Q96JC1 886 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 SMAD5Q99717 465 aaKnown RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 PCBD2Q9H0N5 130 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 RHOJQ9H4E5 214 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 CLMPQ9H6B4 373 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 ARL15Q9NXU5 204 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 NSMCE4AQ9NXX6 385 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 ZNF282Q9UDV7 671 aaPredicted RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 G3BP2Q9UN86 482 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms