RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KRT87PA6NCN2 255 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 SLC28A2O43868 658 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 MMP20O60882 483 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PRLP01236 227 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 IRS1P35568 1242 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 MAPK12P53778 367 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM115Q12893 351 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 SELPLGQ14242 412 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CACNA1EQ15878 2313 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 DUOXA1Q1HG43 343 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 TCEAL5Q5H9L2 206 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 AFMIDQ63HM1 303 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 UTS2BQ765I0 119 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 KRT73Q86Y46 540 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 STON2Q8WXE9 905 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CMTM7Q96FZ5 175 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ZFYVE19Q96K21 471 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 QRFPRQ96P65 431 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PKMYT1Q99640 499 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ZSCAN5AQ9BUG6 496 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF334Q9HCZ1 680 aaPredicted RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 CTPS2Q9NRF8 586 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 IL36AQ9UHA7 158 aa11.29□□□□□ -0.6
NPHP4-204ENST00000460696 PTBP2Q9UKA9 531 aaKnown RBP11.29□□□□□ -0.6
NPHP4-204ENST00000460696 ISM1B1AKI9 464 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CCNDBP1O95273 360 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 KLK1P06870 262 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CD72P21854 359 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 STT3AP46977 705 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 RPS6KA3P51812 740 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 HK3P52790 923 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 SEC13P55735 322 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 ELP6Q0PNE2 266 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 C1DQ13901 141 aaKnown RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 GANABQ14697 944 aaKnown RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 RAB39AQ14964 217 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 NPTX1Q15818 432 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CYP27C1Q4G0S4 372 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CXorf57Q6NSI4 855 aaKnown RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 SPRED2Q7Z698 418 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 RNF175Q8N4F7 328 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 SMYD1Q8NB12 490 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 RAD51AP1Q96B01 352 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 APIPQ96GX9 242 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 ENTPD4Q9Y227 616 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 ASB1Q9Y576 335 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 PNMA8CA0A1B0GUJ8 204 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 TTC34A8MYJ7 566 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 M0QX08 132 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 POP7O75817 140 aaKnown RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 GDI1P31150 447 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 BUD31P41223 144 aaPredicted RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 SPINT3P49223 89 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 PON2Q15165 354 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 DGKKQ5KSL6 1271 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 PTCHD4Q6ZW05 846 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM151AQ8N4L1 468 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 RAB2BQ8WUD1 216 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 MYDGFQ969H8 173 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 HSH2DQ96JZ2 352 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 INPP5KQ9BT40 448 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 ANKRD60Q9BZ19 345 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 PCDHB14Q9Y5E9 798 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 HIDE1A8MVS5 230 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 STATHP02808 62 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 NUDT6P53370 316 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 MRPS15P82914 257 aaKnown RBP11.28□□□□□ -0.6
NPHP4-204ENST00000460696 GPAT3Q53EU6 434 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 P2RY8Q86VZ1 359 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 DEPDC4Q8N2C3 294 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 MCFD2Q8NI22 146 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 FIBINQ8TAL6 211 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 TFAP2CQ92754 450 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 KCNC2Q96PR1 638 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 AIF1LQ9BQI0 150 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 TTLL2Q9BWV7 592 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CCNB1IP1Q9NPC3 277 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 EQTNQ9NQ60 294 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 AGPAT4Q9NRZ5 378 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF451Q9Y4E5 1061 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 FER1L6Q2WGJ9 1857 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 CABIN1Q9Y6J0 2220 aa11.28□□□□□ -0.6
NPHP4-204ENST00000460696 A0A1B0GTW7 788 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 H0YJX3 145 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 TPST2O60704 377 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 MED26O95402 600 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 CCR3P51677 355 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 COL9A2Q14055 689 aaPredicted RBP11.27□□□□□ -0.6
NPHP4-204ENST00000460696 DOC2AQ14183 400 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 SPANXN2Q5MJ10 180 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 EGFLAMQ63HQ2 1017 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 CLECL1Q8IZS7 167 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 AMER2Q8N7J2 671 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 CNIH3Q8TBE1 160 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 PIH1D2Q8WWB5 315 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 CCM2Q9BSQ5 444 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 KCNH6Q9H252 994 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 TPK1Q9H3S4 243 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 SEC14L3Q9UDX4 400 aa11.27□□□□□ -0.6
NPHP4-204ENST00000460696 PLAGL1Q9UM63 463 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms