RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ACTBL2Q562R1 376 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NHSL2Q5HYW2 709 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 EARS2Q5JPH6 523 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TCHHL1Q5QJ38 904 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ATG16L1Q676U5 607 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 HEPHL1Q6MZM0 1159 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MFSD5Q6N075 450 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TTC27Q6P3X3 843 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MFSD7Q6UXD7 560 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NPSR1Q6W5P4 371 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 C1orf186Q6ZWK4 172 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CXXC5Q7LFL8 322 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CUZD1Q86UP6 607 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 GID4Q8IVV7 300 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ABI1Q8IZP0 508 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NUP43Q8NFH3 380 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CHPT1Q8WUD6 406 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 DNAJC9Q8WXX5 260 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MTERF3Q96E29 417 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MARS2Q96GW9 593 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TGS1Q96RS0 853 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC1Q9BTT6 524 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 POLDIP3Q9BY77 421 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM117Q9H0C3 514 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PABPC3Q9H361 631 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 METTL8Q9H825 291 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NCKIPSDQ9NZQ3 722 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 DBNLQ9UJU6 430 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SARDHQ9UL12 918 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ZFR2Q9UPR6 939 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 USP15Q9Y4E8 981 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CPQQ9Y646 472 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 COL6A3P12111 3177 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 OR14I1A6ND48 311 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 C5orf60A6NFR6 353 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM238C9JI98 176 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 FCHO1O14526 889 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TCAPO15273 167 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ARHGEF9O43307 516 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 HS6ST1O60243 411 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 JAK2O60674 1132 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM107AO95990 144 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ANXA2P07355 339 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 AKR1A1P14550 325 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RAB3AP20336 220 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 S100PP25815 95 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PSMA5P28066 241 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ABCD3P28288 659 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RBL1P28749 1068 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MSX2P35548 267 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PRKCIP41743 596 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 VAV2P52735 878 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 AP1S1P61966 158 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 GALK2Q01415 458 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TLE1Q04724 770 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MERTKQ12866 999 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 DGCR6Q14129 220 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MFSD13AQ14CX5 517 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LARS2Q15031 903 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NAB2Q15742 525 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TBCEQ15813 527 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CA9Q16790 459 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ME3Q16798 604 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MEP1BQ16820 701 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 HNRNPA1L2Q32P51 320 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 Q5PR19 223 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 C6orf10Q5SRN2 563 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ERMARDQ5T6L9 678 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NT5DC1Q5TFE4 455 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MEDAGQ5VYS4 303 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CD276Q5ZPR3 534 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 BICRALQ6AI39 1079 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ZFP1Q6P2D0 407 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM270Q6UE05 265 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 AFTPHQ6ULP2 937 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TMIGD1Q6UXZ0 262 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC8DQ7L1W4 858 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SSX9Q7RTT3 188 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PXKQ7Z7A4 578 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 AMZ2Q86W34 360 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC8AQ8IWT6 810 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MICU2Q8IYU8 434 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 C17orf47Q8NEP4 570 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 DPF1Q92782 380 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SPATA13Q96N96 652 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LRFN5Q96NI6 719 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC37BQ96QE4 947 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 XPO6Q96QU8 1125 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 GDF15Q99988 308 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC5A7Q9GZV3 580 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ARMC7Q9H6L4 198 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RANBP3Q9H6Z4 567 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RMND5AQ9H871 391 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MINDY3Q9H8M7 445 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ECT2Q9H8V3 914 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SMURF2Q9HAU4 748 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 BRF2Q9HAW0 419 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 GLOD4Q9HC38 313 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NGBQ9NPG2 151 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms