RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HP1BP3Q5SSJ5 553 aaPredicted RBP19.76■□□□□ 0.75
SDC1-205ENST00000447124 PRAMEF13Q5VWM6 474 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 PAQR3Q6TCH7 311 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 PCGF5Q86SE9 256 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 PARP9Q8IXQ6 854 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 OR11G2Q8NGC1 345 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 PRAP1Q96NZ9 151 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 WDR83Q9BRX9 315 aaKnown RBP19.76■□□□□ 0.75
SDC1-205ENST00000447124 SEMA3GQ9NS98 782 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 PDE10AQ9Y233 779 aa19.76■□□□□ 0.75
SDC1-205ENST00000447124 NAV2Q8IVL1 2488 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 EIF3FO00303 357 aaPredicted RBP19.75■□□□□ 0.75
SDC1-205ENST00000447124 HAT1O14929 419 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 P2RX6O15547 441 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 CCNDBP1O95273 360 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 ITGA3P26006 1051 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 PGGT1BP53609 377 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 RBBP7Q16576 425 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 SPANXN3Q5MJ09 141 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 ATG9BQ674R7 924 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 CNTN4Q8IWV2 1026 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 KLHL7Q8IXQ5 586 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 MIEF2Q96C03 454 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 SNRNP40Q96DI7 357 aaKnown RBP19.75■□□□□ 0.75
SDC1-205ENST00000447124 CABS1Q96KC9 395 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 CAPZA3Q96KX2 299 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 CRB3Q9BUF7 120 aa19.75■□□□□ 0.75
SDC1-205ENST00000447124 ZNF282Q9UDV7 671 aaPredicted RBP19.75■□□□□ 0.75
SDC1-205ENST00000447124 TRMT6Q9UJA5 497 aaKnown RBP19.75■□□□□ 0.75
SDC1-205ENST00000447124 TCP11X1B4DZS4 312 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 TTC4O95801 387 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 ALPPP05187 535 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 OCA2Q04671 838 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 ZXDCQ2QGD7 858 aaPredicted RBP19.74■□□□□ 0.75
SDC1-205ENST00000447124 TEDDM1Q5T9Z0 273 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 MBOAT1Q6ZNC8 495 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 Q6ZS92 163 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 SHISA5Q8N114 240 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 CISD2Q8N5K1 135 aaKnown RBP19.74■□□□□ 0.75
SDC1-205ENST00000447124 AMER3Q8N944 861 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 C8orf44Q96CB5 159 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 PSMG3-AS1Q96PY0 264 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 C3orf18Q9UK00 162 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 SH2B3Q9UQQ2 575 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 B3GNT3Q9Y2A9 372 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 MRPS2Q9Y399 296 aaKnown RBP19.74■□□□□ 0.75
SDC1-205ENST00000447124 CSAG2Q9Y5P2 127 aa19.74■□□□□ 0.75
SDC1-205ENST00000447124 SPTAN1Q13813 2472 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 KLHL41O60662 606 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 IPO13O94829 963 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 STATHP02808 62 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 EZRP15311 586 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 FBLP22087 321 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 SLC26A3P40879 764 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 ELK3P41970 407 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 TUBB8Q3ZCM7 444 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 THEMIS2Q5TEJ8 643 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 GARNL3Q5VVW2 1013 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 UGT3A1Q6NUS8 523 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 TRMT10BQ6PF06 316 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 IGFL2Q6UWQ7 119 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 ADCK2Q7Z695 626 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 CUZD1Q86UP6 607 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 ZADH2Q8N4Q0 377 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 AMER2Q8N7J2 671 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 MCOLN3Q8TDD5 553 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 CERS2Q96G23 380 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 CCDC138Q96M89 665 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 NAT9Q9BTE0 207 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 ATG10Q9H0Y0 220 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 TMEM184CQ9NVA4 438 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 ASF1BQ9NVP2 202 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 UTP6Q9NYH9 597 aaKnown RBP19.73■□□□□ 0.75
SDC1-205ENST00000447124 TAS2R13Q9NYV9 303 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 CDC14AQ9UNH5 594 aa19.73■□□□□ 0.75
SDC1-205ENST00000447124 MAST4O15021 2626 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 ICE1Q9Y2F5 2266 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 A0A0A6YYC8 382 aaPredicted RBP19.72■□□□□ 0.75
SDC1-205ENST00000447124 I3L1I5 382 aaPredicted RBP19.72■□□□□ 0.75
SDC1-205ENST00000447124 TP73O15350 636 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 TSPAN12O95859 305 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 GNG11P61952 73 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 MRPL49Q13405 166 aaKnown RBP19.72■□□□□ 0.75
SDC1-205ENST00000447124 DSG2Q14126 1118 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 HIF1AQ16665 826 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 PHKG1Q16816 387 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 SYT16Q17RD7 645 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 HIBCHQ6NVY1 386 aaPredicted RBP19.72■□□□□ 0.75
SDC1-205ENST00000447124 VN1R4Q7Z5H5 301 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 MVB12AQ96EY5 273 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 MMABQ96EY8 250 aaPredicted RBP19.72■□□□□ 0.75
SDC1-205ENST00000447124 MACROD1Q9BQ69 325 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 TRIM51Q9BSJ1 452 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 YIPF2Q9BWQ6 316 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 PARVBQ9HBI1 364 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 TRPC4Q9UBN4 977 aa19.72■□□□□ 0.75
SDC1-205ENST00000447124 HIVEP3Q5T1R4 2406 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 BLACEA4D250 179 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 FANCGO15287 622 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 C8GP07360 202 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms