RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 RBM20Q5T481 1227 aaKnown RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 SCAIQ8N9R8 606 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 OR7A2PQ8NGA2 310 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 SLC9A6Q92581 669 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 DEPDC7Q96QD5 511 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 IPPKQ9H8X2 491 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MKS1Q9NXB0 559 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 FADS3Q9Y5Q0 445 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 ICE1Q9Y2F5 2266 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 A0A0U1RQS6 177 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 A0A1W2PPC1 479 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 LRRC14BA6NHZ5 514 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 A6NL46 340 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 KLKB1P03952 638 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 P2RY2P41231 377 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 GPAT3Q53EU6 434 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MPP7Q5T2T1 576 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 BROXQ5VW32 411 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 TMEM26Q6ZUK4 368 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 PAQR9Q6ZVX9 377 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 ZDHHC13Q8IUH4 622 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 CENPSQ8N2Z9 138 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 CLHC1Q8NHS4 586 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MZB1Q8WU39 189 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 C12orf43Q96C57 262 aaKnown RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MTERF1Q99551 399 aaKnown RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 PCBD2Q9H0N5 130 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 SCN3BQ9NY72 215 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 DKK3Q9UBP4 350 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 SLC6A14Q9UN76 642 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 IDH3BO43837 385 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 SIX3O95343 332 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 HMGA1P17096 107 aaKnown RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 POU1F1P28069 291 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ADSLP30566 484 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 DPYSQ14117 519 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 PAFAH1B3Q15102 231 aaKnown RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ZC3H12BQ5HYM0 836 aaKnown RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 C1orf189Q5VU69 101 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 SFRP1Q8N474 314 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ZNF276Q8N554 614 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ATG16L2Q8NAA4 619 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 SPPL2AQ8TCT8 520 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 HM13Q8TCT9 377 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 TWIST2Q8WVJ9 160 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 CANT1Q8WVQ1 401 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 NAT6Q93015 286 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 MMABQ96EY8 250 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 GPR22Q99680 433 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 APOOQ9BUR5 198 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ITM2CQ9NQX7 267 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ACSL5Q9ULC5 683 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 CEP350Q5VT06 3117 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 PDLIM1O00151 329 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 SAP18O00422 153 aaKnown RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 CAPN1P07384 714 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 NCK1P16333 377 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 RYKP34925 604 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 CRATP43155 626 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 YAP1P46937 504 aaKnown RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 NIPAL4Q0D2K0 466 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 MED27Q6P2C8 311 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 PAQR3Q6TCH7 311 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 OR8H2Q8N162 312 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 RTP4Q96DX8 246 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 TRMOQ9BU70 441 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 RBCK1Q9BYM8 510 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 IFT80Q9P2H3 777 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 MCM3APO60318 1980 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 B3GALT2O43825 422 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 OR2B3O76000 313 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 NR2F1P10589 423 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 HOXD9P28356 352 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 MAPK12P53778 367 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 VSX2P58304 361 aaPredicted RBP10.34□□□□□ -0.75
TCOF1-204ENST00000427724 LRIT3Q3SXY7 679 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 PRAMEF13Q5VWM6 474 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 SYCE2Q6PIF2 218 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 KIAA0408Q6ZU52 694 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 NXPE1Q8N323 547 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 RORBQ92753 470 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 PPM1MQ96MI6 270 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 OBP2AQ9NY56 170 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 MMP17Q9ULZ9 603 aa10.34□□□□□ -0.75
TCOF1-204ENST00000427724 ZNF860A6NHJ4 632 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 HNRNPCL2B2RXH8 293 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 ERN1O75460 977 aaKnown RBP10.33□□□□□ -0.76
TCOF1-204ENST00000427724 NADKO95544 446 aaPredicted RBP10.33□□□□□ -0.76
TCOF1-204ENST00000427724 PORP16435 677 aaPredicted RBP10.33□□□□□ -0.76
TCOF1-204ENST00000427724 ITGA3P26006 1051 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 ACSL1P33121 698 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 CCR2P41597 374 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 CDK9P50750 372 aaKnown RBP10.33□□□□□ -0.76
TCOF1-204ENST00000427724 INHBCP55103 352 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 SRP54P61011 504 aaKnown RBP10.33□□□□□ -0.76
TCOF1-204ENST00000427724 CEACAM7Q14002 265 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 KIAA0895LQ68EN5 471 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 GCNT7Q6ZNI0 430 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 GPR65Q8IYL9 337 aa10.33□□□□□ -0.76
TCOF1-204ENST00000427724 PNPLA1Q8N8W4 532 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms