RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 UCMAQ8WVF2 138 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 SECISBP2LQ93073 1101 aaKnown RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 PPM1MQ96MI6 270 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 TEX13BQ9BXU2 312 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 PDFQ9HBH1 243 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 RRAGDQ9NQL2 400 aaPredicted RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 NLGN3Q9NZ94 848 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 FBXO2Q9UK22 296 aaPredicted RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 ELF5Q9UKW6 265 aaPredicted RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 PADI2Q9Y2J8 665 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 NACADO15069 1562 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 IGSF1Q8N6C5 1336 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 TLX2O43763 284 aaPredicted RBP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 TBX18O95935 607 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 ATP1B1P05026 303 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 SLC15A1P46059 708 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 NDUFV3P56181 108 aaKnown RBP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 KRT32Q14532 448 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 GPR33Q49SQ1 333 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 KRT79Q5XKE5 535 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 PRR22Q8IZ63 422 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 OR4K1Q8NGD4 311 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 ZNF830Q96NB3 372 aaPredicted RBP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 UNC45AQ9H3U1 944 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 EIF2B3Q9NR50 452 aaKnown RBP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 OLA1Q9NTK5 396 aaKnown RBP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 BCCIPQ9P287 314 aaKnown RBP eCLIP3.35□□□□□ -1.87
LINC01040-201ENST00000425048 IL17BQ9UHF5 180 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 NCAPD3P42695 1498 aa3.35□□□□□ -1.87
LINC01040-201ENST00000425048 IQCMA0A1B0GVH7 501 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 NEMP2A6NFY4 417 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 B4E171 279 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 PRDM1O75626 825 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 HSP90AA1P07900 732 aaKnown RBP3.34□□□□□ -1.87
LINC01040-201ENST00000425048 AADACP22760 399 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 MAPK4P31152 587 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 MAN1A1P33908 653 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 TSPAN7P41732 249 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 NDST2P52849 883 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 ZNF79Q15937 498 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 MAML2Q8IZL2 1156 aaPredicted RBP3.34□□□□□ -1.87
LINC01040-201ENST00000425048 TTC39CQ8N584 583 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 BADQ92934 168 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 CCDC28BQ9BUN5 200 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 RBM24Q9BX46 236 aaKnown RBP3.34□□□□□ -1.87
LINC01040-201ENST00000425048 SLC39A8Q9C0K1 460 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 EQTNQ9NQ60 294 aa3.34□□□□□ -1.87
LINC01040-201ENST00000425048 A0A1W2PQ72 361 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 B4DLN1 442 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 E9PAM4 449 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 PDHXO00330 501 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 SLC1A7O00341 560 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 DANCRP0C864 163 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 IRF2P14316 349 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 VAMP7P51809 220 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 MRPL12P52815 198 aaKnown RBP3.33□□□□□ -1.88
LINC01040-201ENST00000425048 DCDC1P59894 354 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 TRAP1Q12931 704 aaKnown RBP3.33□□□□□ -1.88
LINC01040-201ENST00000425048 MCMDC2Q4G0Z9 681 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 TMUB2Q71RG4 321 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 NUP54Q7Z3B4 507 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 SPDL1Q96EA4 605 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 OCR1Q9BZK8 76 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 KRT84Q9NSB2 600 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 GTF3C4Q9UKN8 822 aa3.33□□□□□ -1.88
LINC01040-201ENST00000425048 IGHV3-20A0A0C4DH32 117 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 OR2A25A4D2G3 310 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 ARHGEF33A8MVX0 844 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 PTGES3LE9PB15 166 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 RENP00797 406 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 FAM200BP0CF97 657 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 LMO2P25791 158 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 SRSF9Q13242 221 aaKnown RBP eCLIP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 KIAA0141Q14154 515 aaPredicted RBP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 IGSF11Q5DX21 431 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 RAB41Q5JT25 222 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 OR4A47Q6IF82 309 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 MFSD12Q6NUT3 480 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 GPC2Q8N158 579 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 MCUQ8NE86 351 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 SSC4DQ8WTU2 575 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 METTL21AQ8WXB1 218 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 PIK3R3Q92569 461 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 FRAT1Q92837 279 aaPredicted RBP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 PHYHIPLQ96FC7 376 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 RADILQ96JH8 1075 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 PAFAH2Q99487 392 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 CLEC5AQ9NY25 188 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 ABT1Q9ULW3 272 aaKnown RBP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 WBP11Q9Y2W2 641 aaKnown RBP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 WRNQ14191 1432 aaPredicted RBP eCLIP3.32□□□□□ -1.88
LINC01040-201ENST00000425048 POGZQ7Z3K3 1410 aa3.32□□□□□ -1.88
LINC01040-201ENST00000425048 PEG3Q9GZU2 1588 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 A0A087X0M5 115 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 A0A1B0GX30 115 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 BCL10O95999 233 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 ANPEPP15144 967 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 PKLRP30613 574 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 HADHAP40939 763 aa3.31□□□□□ -1.88
LINC01040-201ENST00000425048 ELK3P41970 407 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms