RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR52K2Q8NGK3 314 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 OR5M3Q8NGP4 307 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HM13Q8TCT9 377 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CKAP2Q8WWK9 683 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 FAM120BQ96EK7 910 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RNF31Q96EP0 1072 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TEKT5Q96M29 485 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RNF157Q96PX1 679 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 MVB12BQ9H7P6 319 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 AASSQ9UDR5 926 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SSR3Q9UNL2 185 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RGPD2P0DJD1 1756 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 H2AFXP16104 143 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CCZ1BP86790 482 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CCZ1P86791 482 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 LRRC66Q68CR7 880 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 DHRS13Q6UX07 377 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 DPY19L3Q6ZPD9 716 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 GAREM2Q75VX8 874 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 OR52K1Q8NGK4 314 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 STOML3Q8TAV4 291 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RDH11Q8TC12 318 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ART4Q93070 314 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 LINGO1Q96FE5 620 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SMOQ99835 787 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TREM1Q9NP99 234 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TOGARAM1Q9Y4F4 1720 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 H3BNX3 289 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TM9SF1O15321 606 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MT-CO3P00414 261 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MT-ND5P03915 603 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 RLN1P04808 185 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CHRNGP07510 517 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ASPAP45381 313 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TMPRSS3P57727 454 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 GPR33Q49SQ1 333 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 GTF2IRD2BQ6EKJ0 949 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 DEF8Q6ZN54 512 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 HTR3DQ70Z44 454 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 GTF2IRD2Q86UP8 949 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM17Q86X19 198 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 FBXW8Q8N3Y1 598 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ACMSDQ8TDX5 336 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ADAMTS15Q8TE58 950 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TMCO6Q96DC7 493 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 LOXL4Q96JB6 756 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 Q96MT0 163 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MFRPQ9BY79 579 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MRPS2Q9Y399 296 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 LOXL2Q9Y4K0 774 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MYH2Q9UKX2 1941 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 COL18A1P39060 1754 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KIR2DS5A0A0G2JLQ3 304 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 A0A0G2JNG1 304 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KIR2DS3K7RE56 304 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 RAD51CO43502 376 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CTGFP29279 349 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CDC42P60953 191 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CAMK1Q14012 370 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SLC29A2Q14542 456 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KIR2DS5Q14953 304 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SF3A2Q15428 464 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CA9Q16790 459 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 OGFRL1Q5TC84 451 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TMC8Q8IU68 726 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ELMOD2Q8IZ81 293 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM178AQ8NBL3 297 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 NAT14Q8WUY8 206 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SMPDL3AQ92484 453 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PIK3R3Q92569 461 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KAT5Q92993 513 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 DNAJC19Q96DA6 116 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 IP6K3Q96PC2 410 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KCTD15Q96SI1 283 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 LPAR4Q99677 370 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 COPS4Q9BT78 406 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SPATA5L1Q9BVQ7 753 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ZDHHC3Q9NYG2 299 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 EIF3KQ9UBQ5 218 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 AIPO00170 330 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PGRMC2O15173 223 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 AOC1P19801 751 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SDC2P34741 201 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 IFNGR2P38484 337 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF41P51814 821 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MLLT6P55198 1093 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 EIF3IQ13347 325 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 NR1I3Q14994 352 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 USP30Q70CQ3 517 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SEPHS2Q99611 448 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TUBA1CQ9BQE3 449 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ERP44Q9BS26 406 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 FBXO6Q9NRD1 293 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 RDH8Q9NYR8 311 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 B4GALT6Q9UBX8 382 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MTF2Q9Y483 593 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 OR1A2Q9Y585 309 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 FADS3Q9Y5Q0 445 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PRAMEF33A0A0G2JMD5 474 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PLK4O00444 970 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms