RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 IFITM2Q01629 132 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 IRF8Q02556 426 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 KIAA0040Q15053 153 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PLCL1Q15111 1095 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF284Q2VY69 593 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 USP39Q53GS9 565 aaKnown RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CYBRD1Q53TN4 286 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 BRAT1Q6PJG6 821 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SUSD1Q6UWL2 747 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 GRASPQ7Z6J2 395 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF548Q8NEK5 533 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 GOT1L1Q8NHS2 421 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PYCR2Q96C36 320 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 TIFAQ96CG3 184 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ACPTQ9BZG2 426 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 KCNH6Q9H252 994 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 MARCH7Q9H992 704 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SCPEP1Q9HB40 452 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 TBC1D14Q9P2M4 693 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PIKFYVEQ9Y2I7 2098 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 A0A096LPI6 279 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SNTNA6NMZ2 147 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 LILRB3O75022 631 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 MYO1DO94832 1006 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 BMP1P13497 986 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ICAM2P13598 275 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 POLR2EP19388 210 aaKnown RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 DMC1Q14565 340 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 GGTA1PQ4G0N0 100 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 LILRA6Q6PI73 481 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 EID3Q8N140 333 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SVOPLQ8N434 492 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CHST14Q8NCH0 376 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ASB11Q8WXH4 323 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 NRBF2Q96F24 287 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 POLR1BQ9H9Y6 1135 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 NOSIPQ9Y314 301 aaKnown RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PLXNA4Q9HCM2 1894 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CROCCQ5TZA2 2017 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 RFXANKO14593 260 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 AQP9O43315 295 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PRKD3O94806 890 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 EPCAMP16422 314 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 EN2P19622 333 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CDH3P22223 829 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 VIPR1P32241 457 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 HSD17B7P56937 341 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 NUP107P57740 925 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 B4GALNT1Q00973 533 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 VAC14Q08AM6 782 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CHIT1Q13231 466 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 NDUFA5Q16718 116 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 C21orf62-AS1Q17RA5 79 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 C8orf59Q8N0T1 100 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 TERB1Q8NA31 727 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PNPT1Q8TCS8 783 aaKnown RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CSGALNACT1Q8TDX6 532 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 NELL1Q92832 810 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 APOLD1Q96LR9 279 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 RDH12Q96NR8 316 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 VPS35Q96QK1 796 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ATG10Q9H0Y0 220 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SOX17Q9H6I2 414 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-204ENST00000392003 CERS4Q9HA82 394 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PCDH12Q9NPG4 1184 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 DPP7Q9UHL4 492 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF639Q9UID6 485 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 BAG5Q9UL15 447 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 SLC22A14Q9Y267 594 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 WNT6Q9Y6F9 365 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 IGLV3-16A0A075B6K0 115 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 FAM220BPB1ANY3 271 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CCRL2O00421 344 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CREG1O75629 220 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 LRATO95237 230 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 HPRP00739 348 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 GSNP06396 782 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 RPL10P27635 214 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ST8SIA6P61647 398 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ADARB1P78563 741 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 PLA2G4EQ3MJ16 856 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 LY6G5CQ5SRR4 150 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 TMEM240Q5SV17 173 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 PXDC1Q5TGL8 231 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 FRG2Q64ET8 278 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 DCDC5Q6ZRR9 648 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 GATAD2AQ86YP4 633 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SYT12Q8IV01 421 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ATL1Q8WXF7 558 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 TMEM159Q96B96 161 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 FRG2BQ96QU4 278 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ADNPQ9H2P0 1102 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 LINC00597Q9H2U6 94 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CEP290O15078 2479 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF197O14709 1029 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 MTX2O75431 263 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 AP2A2O94973 939 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 TYRP14679 529 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 DDX6P26196 483 aaKnown RBP eCLIP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms