RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 WASHC2DQ5SRD0 308 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TLDC1Q6P9B6 456 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 INO80CQ6PI98 192 aaPredicted RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 TAOK1Q7L7X3 1001 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 ISCA2Q86U28 154 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 THOC6Q86W42 341 aaKnown RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 C17orf64Q86WR6 236 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 PLD6Q8N2A8 252 aaKnown RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 DTWD1Q8N5C7 304 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 UBLCP1Q8WVY7 318 aaPredicted RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 ISL2Q96A47 359 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 KIAA1143Q96AT1 154 aaPredicted RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 RHBDF1Q96CC6 855 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TSNARE1Q96NA8 513 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 ZNF285Q96NJ3 590 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TMEM79Q9BSE2 394 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 DHRS4Q9BTZ2 278 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 CHST8Q9H2A9 424 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 NMRAL1Q9HBL8 299 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TMEM184CQ9NVA4 438 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 ZNF358Q9NW07 568 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 CD274Q9NZQ7 290 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 LHX6Q9UPM6 363 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 SLC22A14Q9Y267 594 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 PCDHGA4Q9Y5G9 962 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 HEATR5BQ9P2D3 2071 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 FEZF1A0PJY2 475 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 TERTO14746 1132 aaKnown RBP12.78□□□□□ -0.36
VPS28-202ENST00000377348 KATNA1O75449 491 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 WDR47O94967 919 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 MED26O95402 600 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 SHBGP04278 402 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 EZRP15311 586 aaKnown RBP12.78□□□□□ -0.36
VPS28-202ENST00000377348 GCGRP47871 477 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 SLC6A12P48065 614 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 RPS18P62269 152 aaKnown RBP12.78□□□□□ -0.36
VPS28-202ENST00000377348 MEF2AQ02078 507 aaPredicted RBP12.78□□□□□ -0.36
VPS28-202ENST00000377348 TCTE1Q5JU00 501 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 CATSPEREQ5SY80 951 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 FAM69BQ5VUD6 431 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 ZNF385CQ66K41 422 aaPredicted RBP12.78□□□□□ -0.36
VPS28-202ENST00000377348 RHBDD2Q6NTF9 364 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 ADGRD1Q6QNK2 874 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 NEIL2Q969S2 332 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 LRFN5Q96NI6 719 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 GPR78Q96P69 363 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 GBP5Q96PP8 586 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 OR2A5Q96R48 311 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 ATOH8Q96SQ7 321 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 HAUS8Q9BT25 410 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 NDC1Q9BTX1 674 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 WWOXQ9NZC7 414 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 AP1M2Q9Y6Q5 423 aa12.78□□□□□ -0.36
VPS28-202ENST00000377348 SUPT3HB4E1H0 165 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 UBXN8O00124 270 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 NKX2-8O15522 239 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 P2RX6O15547 441 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 LCMT2O60294 686 aaKnown RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 SRPX2O60687 465 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 KERAO60938 352 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SUPT3HO75486 399 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 KLHL2O95198 593 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 KLK3P07288 261 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 CAPN1P07384 714 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SNRPAP09012 282 aaKnown RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 HBQ1P09105 142 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 ALAS2P22557 587 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 CNTFP26441 200 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SLC26A3P40879 764 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 BCL6P41182 706 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 HSPA7P48741 367 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 HNMTP50135 292 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 NFKB2Q00653 900 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 DNASE1L3Q13609 305 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 NAA30Q147X3 362 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 GRM7Q14831 915 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SLC9A5Q14940 896 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 FAM83EQ2M2I3 478 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 HKDC1Q2TB90 917 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 FAM198BQ6UWH4 519 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 ZNF517Q6ZMY9 492 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 TTLL10Q6ZVT0 673 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 GPR155Q7Z3F1 870 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 METTL27Q8N6F8 245 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 TTC29Q8NA56 475 aaPredicted RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 PDPRQ8NCN5 879 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 STAG3L4Q8TBR4 150 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SLC5A11Q8WWX8 675 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS28-202ENST00000377348 STARD8Q92502 1023 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SLC45A3Q96JT2 553 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 MACROD1Q9BQ69 325 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SPNS1Q9H2V7 528 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 CUTCQ9NTM9 273 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 TXLNGQ9NUQ3 528 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 NDOR1Q9UHB4 597 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 RALYQ9UKM9 306 aaKnown RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 SRPK3Q9UPE1 567 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 RUVBL1Q9Y265 456 aaKnown RBP12.77□□□□□ -0.37
VPS28-202ENST00000377348 DYRK1BQ9Y463 629 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms