RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 UGT2B7P16662 529 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 EFNA1P20827 205 aaPredicted RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 PEBP1P30086 187 aaKnown RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 LSSP48449 732 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 CSRP3P50461 194 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 GBX1Q14549 363 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 KIR2DS5Q14953 304 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 FRMD7Q6ZUT3 714 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 SORT1Q99523 831 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 RBCK1Q9BYM8 510 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 DRC3Q9H069 523 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 MVB12BQ9H7P6 319 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 THAP1Q9NVV9 213 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ARMCX1Q9P291 453 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 NDOR1Q9UHB4 597 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ZNF225Q9UK10 706 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 CDX4O14627 284 aaPredicted RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 EPN2O95208 641 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 ALAS2P22557 587 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 FOXL2P58012 376 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CCL7P80098 99 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 DMPKQ09013 629 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 NR6A1Q15406 480 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 C11orf91Q3C1V1 193 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 PIGWQ7Z7B1 504 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SHISA5Q8N114 240 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 PDPRQ8NCN5 879 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SLC5A11Q8WWX8 675 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CCDC126Q96EE4 140 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 MRPL1Q9BYD6 325 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 ZNF490Q9ULM2 529 aaPredicted RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 TNPO3Q9Y5L0 923 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 HEBP2Q9Y5Z4 205 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 AZIN1O14977 448 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 NDUFS4O43181 175 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 B4GAT1O43505 415 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 LRATO95237 230 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CLDN9O95484 217 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CD22P20273 847 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SHMT2P34897 504 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 VSX2P58304 361 aaPredicted RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 OLR1P78380 273 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 ASPHQ12797 758 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SP140Q13342 867 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 ABRAXAS2Q15018 415 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CACHD1Q5VU97 1274 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 ZCCHC8Q6NZY4 707 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 TMPRSS9Q7Z410 1059 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 B3GNT8Q7Z7M8 397 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 ALYREFQ86V81 257 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 WDR75Q8IWA0 830 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 ADGRF3Q8IZF5 1079 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 OR2A1Q8NGT9 310 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 GPR27Q9NS67 375 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 POT1Q9NUX5 634 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 EVA1BQ9NVM1 165 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 TP53BP1Q12888 1972 aaPredicted RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 HAT1O14929 419 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 LCMT2O60294 686 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 LDOC1O95751 146 aaPredicted RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 OTCP00480 354 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 EPORP19235 508 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 HNRNPH1P31943 449 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 CASP2P42575 452 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 NR0B2Q15466 257 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SLC9B1Q4ZJI4 515 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 OR2L3Q8NG85 312 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 OR4C6Q8NH72 309 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 DOK4Q8TEW6 326 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 TWIST2Q8WVJ9 160 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 FBXL8Q96CD0 374 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 C3orf30Q96M34 536 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 CATSPER2Q96P56 530 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 TRIM55Q9BYV6 548 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SLC7A5P2Q9GIP4 190 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 EML4Q9HC35 981 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 FAM60AQ9NP50 221 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 SSU72Q9NP77 194 aaKnown RBP8.86□□□□□ -0.99
USP4-202ENST00000351842 POLG2Q9UHN1 485 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 BAIAP2L1Q9UHR4 511 aa8.86□□□□□ -0.99
USP4-202ENST00000351842 LOC105369274A0A096LPK9 316 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 IGHV5-51A0A0C4DH38 117 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 LOC102723532A0A0G2JNH3 316 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 MAGEB17A8MXT2 336 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 ANKRD65E5RJM6 399 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 ULK1O75385 1050 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 TROVE2P10155 538 aaKnown RBP eCLIP8.85□□□□□ -0.99
USP4-202ENST00000351842 GRK2P25098 689 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 PKLRP30613 574 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 PTGER1P34995 402 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 GRK6P43250 576 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 HNMTP50135 292 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 RPL14P50914 215 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 UBE2IP63279 158 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 SIM1P81133 766 aaPredicted RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 SUZ12Q15022 739 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 OR4N4Q8N0Y3 316 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 RDH11Q8TC12 318 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 PIWIL2Q8TC59 973 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 OR52B2Q96RD2 323 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms