RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 PLD3Q8IV08 490 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 ZBED8Q8IZ13 594 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 FKBP10Q96AY3 582 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 OR2A5Q96R48 311 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 SPSB2Q99619 263 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 MESP1Q9BRJ9 268 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 SMYD2Q9NRG4 433 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 CTSFQ9UBX1 484 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 IKZF3Q9UKT9 509 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 VWA7Q9Y334 891 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 MAU2Q9Y6X3 613 aa13.77□□□□□ -0.21
HMGN3-202ENST00000344726 SHANK1Q9Y566 2161 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 P2RX6O15547 441 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 SORBS2O94875 1100 aaKnown RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 C8GP07360 202 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 CD97P48960 835 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 SNRPNP63162 240 aaKnown RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 MGAT5Q09328 741 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 SP140Q13342 867 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 NAA25Q14CX7 972 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 TRADDQ15628 312 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 NKG7Q16617 165 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 FAM214AQ32MH5 1076 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 FAM45BPQ6NSW5 357 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 CAPN12Q6ZSI9 719 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 SHISA6Q6ZSJ9 500 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 MED25Q71SY5 747 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 ZC3HC1Q86WB0 502 aaKnown RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 MYO1HQ8N1T3 1032 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 ARHGEF39Q8N4T4 335 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 TMEM102Q8N9M5 508 aaPredicted RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 Q8NA96 180 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 FAM45AQ8TCE6 357 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 MCOLN3Q8TDD5 553 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 PTERQ96BW5 349 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 CCDC138Q96M89 665 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 MCMBPQ9BTE3 642 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 ATG10Q9H0Y0 220 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 SLC26A1Q9H2B4 701 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 PARVBQ9HBI1 364 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 LUZP4Q9P127 313 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 WHRNQ9P202 907 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 ZFATQ9P243 1243 aa13.76□□□□□ -0.21
HMGN3-202ENST00000344726 CORO1CQ9ULV4 474 aaPredicted RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 RUVBL1Q9Y265 456 aaKnown RBP13.76□□□□□ -0.21
HMGN3-202ENST00000344726 CLEC18AA5D8T8 446 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 H7BY64 318 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 SLC16A5O15375 505 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 ALOX12BO75342 701 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 CCNDBP1O95273 360 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 ALBP02768 609 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 CD63P08962 238 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 EZRP15311 586 aaKnown RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 IL2P60568 153 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 ABATP80404 500 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 ZNF460Q14592 562 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 PRR30Q53SZ7 412 aaPredicted RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 DCAF10Q5QP82 559 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 THEMIS2Q5TEJ8 643 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 PRAMEF13Q5VWM6 474 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 AGTRAPQ6RW13 159 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 CLEC18BQ6UXF7 455 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 ZNF572Q7Z3I7 529 aaPredicted RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 MAATS1Q7Z4T9 603 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 STRA8Q7Z7C7 330 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 RBMXL3Q8N7X1 1067 aaKnown RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 CLEC18CQ8NCF0 446 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 BBOF1Q8ND07 529 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 PRAP1Q96NZ9 151 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 SOX17Q9H6I2 414 aaPredicted RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 WDR54Q9H977 334 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 CCDC177Q9NQR7 707 aaPredicted RBP13.75□□□□□ -0.21
HMGN3-202ENST00000344726 P4HTMQ9NXG6 502 aa13.75□□□□□ -0.21
HMGN3-202ENST00000344726 LRRK2Q5S007 2527 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 USP9XQ93008 2570 aaPredicted RBP13.74□□□□□ -0.21
HMGN3-202ENST00000344726 VSTM2BA6NLU5 285 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 CXorf49A8MYA2 514 aaPredicted RBP13.74□□□□□ -0.21
HMGN3-202ENST00000344726 STATHP02808 62 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 SSTR1P30872 391 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 UQCRFS1P47985 274 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 RELAQ04206 551 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 NAE1Q13564 534 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 MUM1Q2TAK8 710 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 ADCK2Q7Z695 626 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 SLC26A11Q86WA9 606 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 CSNK1A1LQ8N752 337 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 CABS1Q96KC9 395 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 SMAD5Q99717 465 aaKnown RBP13.74□□□□□ -0.21
HMGN3-202ENST00000344726 SGPP1Q9BX95 441 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 ZNF304Q9HCX3 659 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 SAYSD1Q9NPB0 183 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 GPR83Q9NYM4 423 aa13.74□□□□□ -0.21
HMGN3-202ENST00000344726 MRPS2Q9Y399 296 aaKnown RBP13.74□□□□□ -0.21
HMGN3-202ENST00000344726 FAM95CA0A1B0GW59 222 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 SOCS6O14544 535 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 NDC80O14777 642 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 FFAR3O14843 346 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 GPR42O15529 346 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 FOXS1O43638 330 aa13.73□□□□□ -0.21
HMGN3-202ENST00000344726 C1QAP02745 245 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms