RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 H3BN98 237 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TMX2-CTNND1H3BSU7 103 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 AURKAO14965 403 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 IL12RB1P42701 662 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 RHDQ02161 417 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FGD3Q5JSP0 725 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TCHHL1Q5QJ38 904 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PIM3Q86V86 326 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FBXO30Q8TB52 745 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ASB11Q8WXH4 323 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NR4A3Q92570 626 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DPH7Q9BTV6 452 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TPT1P8Q9HAU6 139 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NEK6Q9HC98 313 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TAS2R9Q9NYW1 312 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SRPK3Q9UPE1 567 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 GDF5P43026 501 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 KCNC4Q03721 635 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PWP1Q13610 501 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ZSWIM7Q19AV6 140 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM198Q66K66 360 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 Q6ZNB5 142 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 EGFL6Q8IUX8 553 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 OR56A1Q8NGH5 318 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ASB9Q96DX5 294 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 EBF4Q9BQW3 602 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 OSBPL11Q9BXB4 747 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 HPS4Q9NQG7 708 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 LYARQ9NX58 379 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SH3GLB1Q9Y371 365 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CACNA1BQ00975 2339 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 OR1I1O60431 355 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 MATN4O95460 622 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 AK1P00568 194 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ASGR2P07307 311 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ARSAP15289 507 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 JUNDP17535 347 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CD38P28907 300 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 SOX11P35716 441 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PRLHRP49683 370 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CLDN8P56748 225 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CREB5Q02930 508 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 DPTQ07507 201 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 NCF4Q15080 339 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 EGFLAMQ63HQ2 1017 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ALYREFQ86V81 257 aaKnown RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 TICAM1Q8IUC6 712 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CAMKK1Q8N5S9 505 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 METTL25Q8N6Q8 603 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PACRGLQ8N7B6 248 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 OR52B2Q96RD2 323 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 EHD1Q9H4M9 534 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM27Q9HBJ8 222 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 EXOSC4Q9NPD3 245 aaKnown RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 SUCOQ9UBS9 1254 aaKnown RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PPM1HQ9ULR3 514 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ABCA4P78363 2273 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CLEC3AO75596 197 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CLPTM1O96005 669 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 RPL10P27635 214 aaKnown RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 TIA1P31483 386 aaKnown RBP eCLIP6.65□□□□□ -1.343e-8■■■■■ 34.8
SF3B1-201ENST00000335508 INPP1P49441 399 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 UNC50Q53HI1 259 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ZFAND4Q86XD8 727 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ARMC8Q8IUR7 673 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PIGKQ92643 395 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 EXOSC8Q96B26 276 aaKnown RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 MOAP1Q96BY2 351 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 LMLNQ96KR4 655 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 NTMT1Q9BV86 223 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PCTPQ9UKL6 214 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CLIC1O00299 241 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 LRATO95237 230 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ATP6V1G2O95670 118 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 NR2F6P10588 404 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 AGXTP21549 392 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CSTF2P33240 577 aaKnown RBP eCLIP6.65□□□□□ -1.341e-6■■□□□ 14.2
SF3B1-201ENST00000335508 CAPZA2P47755 286 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 GALK1P51570 392 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CCR4P51679 360 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 MEF2AQ02078 507 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM44Q2T9K0 475 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 SLC44A4Q53GD3 710 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 GCNT6Q5T4J0 391 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 VWA5B1Q5TIE3 1220 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 OR52E8Q6IFG1 317 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 HACD2Q6Y1H2 254 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 BNIPLQ7Z465 357 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 ADGRD2Q7Z7M1 963 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CLEC14AQ86T13 490 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 AMIGO1Q86WK6 493 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 C10orf53Q8N6V4 93 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 OLIG1Q8TAK6 271 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 TRIM63Q969Q1 353 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 PRSS16Q9NQE7 514 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 SLC17A6Q9P2U8 582 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 C19orf25Q9UFG5 118 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-201ENST00000335508 CYP8B1Q9UNU6 501 aa6.65□□□□□ -1.34
SF3B1-201ENST00000335508 E7ENX8 843 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms