RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 MDGA1Q8NFP4 955 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 SOCS4Q8WXH5 440 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 NEDD4LQ96PU5 975 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PHOX2BQ99453 314 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PRDM5Q9NQX1 630 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PLSCR3Q9NRY6 295 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PRRC2BQ5JSZ5 2229 aaKnown RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 HAS3O00219 553 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 AQP1P29972 269 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 CDKN2CP42773 168 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 KRT6CP48668 564 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 RPS14P62263 151 aaKnown RBP13.33□□□□□ -0.27
SYNE3-201ENST00000334258 MED22Q15528 200 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 TAB1Q15750 504 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF621Q6ZSS3 439 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 SLC46A3Q7Z3Q1 461 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 PIK3R3Q92569 461 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 TP53INP1Q96A56 240 aa13.33□□□□□ -0.27
SYNE3-201ENST00000334258 CINPQ9BW66 212 aaPredicted RBP13.33□□□□□ -0.27
SYNE3-201ENST00000334258 ZMAT5Q9UDW3 170 aaKnown RBP13.33□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF236Q9UL36 1845 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 A0A0D9SEW6 157 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MRPS14O60783 128 aaKnown RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 HOXB6P17509 224 aaKnown RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 CA5AP35218 305 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MLLT3P42568 568 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 ATN1P54259 1190 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 UGT2B15P54855 530 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MRPS6P82932 125 aaKnown RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 STARD3Q14849 445 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 PCBP2Q15366 365 aaKnown RBP eCLIP13.33□□□□□ -0.282e-6■■■■■ 29.7
SYNE3-201ENST00000334258 TAF1AQ15573 450 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 ARTNQ5T4W7 220 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 NEK5Q6P3R8 708 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 TTC23LQ6PF05 361 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 ZNF605Q86T29 641 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 UBQLNLQ8IYU4 475 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 RAET1EQ8TD07 263 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 KCNJ9Q92806 393 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 PMEPA1Q969W9 287 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 PDLIM5Q96HC4 596 aaKnown RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MED30Q96HR3 178 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 HSH2DQ96JZ2 352 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 ADAM2Q99965 735 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SLC30A2Q9BRI3 323 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 BEX2Q9BXY8 128 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 KCNH6Q9H252 994 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 RPRD1BQ9NQG5 326 aaKnown RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SIRT5Q9NXA8 310 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 HCSTQ9UBK5 93 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 RPS6KA6Q9UK32 745 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MOXD2PA6NHM9 499 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 LOC730098B7Z3J9 87 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 KIAA0513O60268 411 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 MSL3P1P0C860 447 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 PRKCAP17252 672 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 WEE1P30291 646 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SLC19A1P41440 591 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 CSNK2BP67870 215 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 CDK10Q15131 360 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 PARP15Q460N3 678 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 C10orf120Q5SQS8 335 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 CYP4Z2PQ8N1L4 340 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 OR7D4Q8NG98 312 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 HCAR2Q8TDS4 363 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 CITED4Q96RK1 184 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 DPH2Q9BQC3 489 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-201ENST00000334258 LATS2Q9NRM7 1088 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 IMPAD1Q9NX62 359 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SPASTQ9UBP0 616 aa13.33□□□□□ -0.28
SYNE3-201ENST00000334258 SLC12A8A0AV02 714 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 WNT9AO14904 365 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 NBNO60934 754 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 B3GALNT1O75752 331 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 CPSF4O95639 269 aaKnown RBP13.32□□□□□ -0.28
SYNE3-201ENST00000334258 ARHGEF7Q14155 803 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 TBCEQ15813 527 aaPredicted RBP13.32□□□□□ -0.28
SYNE3-201ENST00000334258 DEFB115Q30KQ5 88 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 SLC39A12Q504Y0 691 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 APH1BQ8WW43 257 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 TRNT1Q96Q11 434 aaKnown RBP13.32□□□□□ -0.28
SYNE3-201ENST00000334258 PANX1Q96RD7 426 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 GPRC5BQ9NZH0 403 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 DLGAP4Q9Y2H0 992 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 SPEF1Q9Y4P9 236 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 A3GALT2U3KPV4 340 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 PRAMEF11O60813 436 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 KDELR2P33947 212 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 MAGEA2P43356 314 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 RGS6P49758 472 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 CRISP3P54108 245 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 GNG2P59768 71 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 ST3GAL4Q11206 333 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 SLC14A1Q13336 389 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 UPP1Q16831 310 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 USP39Q53GS9 565 aaKnown RBP13.32□□□□□ -0.28
SYNE3-201ENST00000334258 OR4F3Q6IEY1 312 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 MON1AQ86VX9 555 aa13.32□□□□□ -0.28
SYNE3-201ENST00000334258 CALHM3Q86XJ0 350 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms