RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 NCKIPSDQ9NZQ3 722 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 KLHL8Q9P2G9 620 aaPredicted RBP4.79□□□□□ -1.64
CKS1B-201ENST00000308987 IPO11Q9UI26 975 aaKnown RBP4.79□□□□□ -1.64
CKS1B-201ENST00000308987 SCML2Q9UQR0 700 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 SLC27A6Q9Y2P4 619 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 ACOT9Q9Y305 439 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 AAR2Q9Y312 384 aaKnown RBP4.79□□□□□ -1.64
CKS1B-201ENST00000308987 SH3BP1Q9Y3L3 701 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 RAI2Q9Y5P3 530 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 CENPEQ02224 2701 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 LRRK1Q38SD2 2015 aa4.79□□□□□ -1.64
CKS1B-201ENST00000308987 SPTAN1Q13813 2472 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ARHGEF17Q96PE2 2063 aaPredicted RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 TCRBV3S1A0A5B6 114 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 HEATR9A2RTY3 570 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 BBIP1A8MTZ0 92 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 M0QYT0 321 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PLK4O00444 970 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SDHDO14521 159 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 AIM2O14862 343 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 WNT9AO14904 365 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SMAD7O15105 426 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SUSD5O60279 629 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DLX3O60479 287 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 NDUFS2O75306 463 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 BMP10O95393 424 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 STAMBPO95630 424 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 LTFP02788 710 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ADH4P08319 380 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 RBP1P09455 135 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SBK3P0C264 359 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SLC35E2BP0CK96 405 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 STMN1P16949 149 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ZNF26P17031 533 aaPredicted RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CCNCP24863 283 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SLC7A1P30825 629 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CSF2RBP32927 897 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ACSL1P33121 698 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 MRPL19P49406 292 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CXCR3P49682 368 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CDK9P50750 372 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 GEMP55040 296 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 GFRA1P56159 465 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 NUP107P57740 925 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DAOAP59103 153 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 TPI1P60174 286 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 RAB10P61026 200 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PSME3P61289 254 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CRADDP78560 199 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 MRPS22P82650 360 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 MYBPC1Q00872 1141 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ZBTB17Q13105 803 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DCTN2Q13561 401 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PTK2BQ14289 1009 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SQLEQ14534 574 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 USP10Q14694 798 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 GRM3Q14832 879 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SHBQ15464 509 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SMAD1Q15797 465 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 LRRC36Q1X8D7 754 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 FAM83EQ2M2I3 478 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 NADK2Q4G0N4 442 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 KCTD21Q4G0X4 260 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DCAF6Q58WW2 860 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 COQ5Q5HYK3 327 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 RAB41Q5JT25 222 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 WDR45BQ5MNZ6 344 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SAMD4BQ5PRF9 694 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PRAMEF14Q5SWL7 426 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 VWA5B1Q5TIE3 1220 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PM20D1Q6GTS8 502 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 KIAA0930Q6ICG6 404 aaPredicted RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 LRRC8EQ6NSJ5 796 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PPP4R4Q6NUP7 873 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PRMT9Q6P2P2 845 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 KLHDC10Q6PID8 442 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DHRS4L2Q6PKH6 230 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DHRS13Q6UX07 377 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 RBM44Q6ZP01 1051 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ZNF627Q7L945 461 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 BHLHA9Q7RTU4 235 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PIGZQ86VD9 579 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SATL1Q86VE3 508 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SLC22A9Q8IVM8 553 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CHERPQ8IWX8 916 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 LSMEM2Q8N112 164 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 SIX6OS1Q8N1H7 587 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PYROXD2Q8N2H3 581 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 PELI3Q8N2H9 469 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ANKFN1Q8N957 763 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 DTX3Q8N9I9 347 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 KDM1BQ8NB78 822 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CADM4Q8NFZ8 388 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 WFDC5Q8TCV5 224 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CALML6Q8TD86 181 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 ADAMTS16Q8TE57 1224 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 CLEC4CQ8WTT0 213 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 TSPEARQ8WU66 669 aa4.78□□□□□ -1.64
CKS1B-201ENST00000308987 NDRG1Q92597 394 aaKnown RBP4.78□□□□□ -1.64
CKS1B-201ENST00000308987 FATE1Q969F0 183 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms