RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 REEP4Q9H6H4 257 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SERINC1Q9NRX5 453 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 PNPLA3Q9NST1 481 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 HCFC1R1Q9NWW0 138 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 IFT52Q9Y366 437 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 V9GYQ6 96 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 NDUFB5O43674 189 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CYP7B1O75881 506 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SEC24DO94855 1032 aaPredicted RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 FGF4P08620 206 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 TMED10P49755 219 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 OLR1P78380 273 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ZNF311Q5JNZ3 666 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 KANK2Q63ZY3 851 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 NAIF1Q69YI7 327 aaPredicted RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 SLC30A9Q6PML9 568 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 EXOSC8Q96B26 276 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 Q9N2J8 555 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 OR6C2Q9NZP2 312 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 A0A1W2PP18 115 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 H3BN98 237 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SLC35E2BP0CK96 405 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SRFP11831 508 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CTGFP29279 349 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ITGADQ13349 1161 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CTC1Q2NKJ3 1217 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ATG9BQ674R7 924 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 FAM20CQ8IXL6 584 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ZSCAN1Q8NBB4 408 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 RPLP0P6Q8NHW5 317 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 FBXO30Q8TB52 745 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CD180Q99467 661 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 RPRD1BQ9NQG5 326 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 NFKBIL1Q9UBC1 381 aaPredicted RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 SLC22A14Q9Y267 594 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SAMHD1Q9Y3Z3 626 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 KCTD3Q9Y597 815 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 MFN2O95140 757 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 THEGLP0DJG4 465 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 RAP2AP10114 183 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CDH1P12830 882 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ANPEPP15144 967 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SLC13A2Q13183 592 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 GRM7Q14831 915 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 PARS2Q7L3T8 475 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 CNBD2Q96M20 576 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 NSMCE3Q96MG7 304 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 GPATCH1Q9BRR8 931 aaKnown RBP13.24□□□□□ -0.29
LDLR-201ENST00000252444 G6PC3Q9BUM1 346 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 KRT36O76013 467 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 NCBP2P52298 156 aaKnown RBP eCLIP13.23□□□□□ -0.29
LDLR-201ENST00000252444 GGTA1PQ4G0N0 100 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ACSBG2Q5FVE4 666 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 CLEC6AQ6EIG7 209 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 MICU2Q8IYU8 434 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 PNPT1Q8TCS8 783 aaKnown RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 CENPNQ96H22 339 aaPredicted RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 TAPBPLQ9BX59 468 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 EHD1Q9H4M9 534 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ARL8BQ9NVJ2 186 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ADAM29Q9UKF5 820 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 NUMBLQ9Y6R0 609 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ERI3O43414 337 aaKnown RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 TLX3O43711 291 aaPredicted RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 DSTNP60981 165 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 FBXW10Q5XX13 1052 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 TMEM154Q6P9G4 183 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 IYDQ6PHW0 289 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 GEMIN6Q8WXD5 167 aaKnown RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 KLK6Q92876 244 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 BTBD9Q96Q07 612 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 WDR55Q9H6Y2 383 aaPredicted RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 FBXW2Q9UKT8 454 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 A0A096LPI6 279 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 PRSS51A0A1B0GVH4 220 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 NTRK1P04629 796 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 PRKCGP05129 697 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 TIA1P31483 386 aaKnown RBP eCLIP13.23□□□□□ -0.295e-14■■■■■ 40.8
LDLR-201ENST00000252444 CCR4P51679 360 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 SRP54P61011 504 aaKnown RBP13.23□□□□□ -0.29
LDLR-201ENST00000252444 FAM129CQ86XR2 697 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ZDHHC1Q8WTX9 485 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ASB9Q96DX5 294 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 TRAPPC9Q96Q05 1148 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 LGR4Q9BXB1 951 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 S100A14Q9HCY8 104 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 MCM8Q9UJA3 840 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 LDB2O43679 373 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ANXA8P13928 327 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 MAGEA3P43357 314 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ZNF460Q14592 562 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 RASGRP3Q8IV61 690 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.23□□□□□ -0.29
LDLR-201ENST00000252444 PQLC1Q8N2U9 271 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 ZUFSPQ96AP4 578 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 TMEM5Q9Y2B1 443 aa13.23□□□□□ -0.29
LDLR-201ENST00000252444 FADS2P1A8MWK0 482 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 LOC730098B7Z3J9 87 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 CHST10O43529 356 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 TSPAN8P19075 237 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms