RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ST3GAL3Q11203 375 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 SP140Q13342 867 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 ENPP2Q13822 863 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 GPR68Q15743 365 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 MAPK14Q16539 360 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 CCDC107Q8WV48 283 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 BRI3BPQ8WY22 251 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 IL4I1Q96RQ9 567 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 PPM1HQ9ULR3 514 aa13.21□□□□□ -0.3
SF3A1-201ENST00000215793 C3P01024 1663 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 A0A1W2PRQ8 180 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 LOC730098B7Z3J9 87 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 MTX2O75431 263 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 KAT7O95251 611 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 CLDN7O95471 211 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 EMX2Q04743 252 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 SYT16Q17RD7 645 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF613Q6PF04 617 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 Q6ZVU0 165 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM17Q86X19 198 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 NR4A3Q92570 626 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 NKD1Q969G9 470 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 LYARQ9NX58 379 aaKnown RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 MED11Q9P086 117 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 SLC2A6Q9UGQ3 507 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TAC3Q9UHF0 121 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 FER1L4A9Z1Z3 1794 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PRSS51A0A1B0GVH4 220 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF726A6NNF4 738 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PPEF2O14830 753 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 KDELR3O43731 214 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF20P17024 532 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TMIGD1Q6UXZ0 262 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 CILP2Q8IUL8 1156 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 NCSTNQ92542 709 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 KCNJ9Q92806 393 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PPP1R14BQ96C90 147 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 BCAS3Q9H6U6 928 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 FKBP14Q9NWM8 211 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PDLIM1O00151 329 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 CTSOP43234 321 aaPredicted RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 OGDHQ02218 1023 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PTCHD3Q3KNS1 767 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 CLEC12AQ5QGZ9 265 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 RBM20Q5T481 1227 aaKnown RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 GOLGA7Q7Z5G4 137 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PNLDC1Q8NA58 520 aaKnown RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TSTD1Q8NFU3 115 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 OR56A1Q8NGH5 318 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 DGAT2Q96PD7 388 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PKP4Q99569 1192 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 EHD1Q9H4M9 534 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TPT1P8Q9HAU6 139 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TDP1Q9NUW8 608 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 PTBP2Q9UKA9 531 aaKnown RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 GNB5O14775 395 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 NDUFS4O43181 175 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF8P17098 575 aaPredicted RBP13.2□□□□□ -0.3
SF3A1-201ENST00000215793 MAGEA11P43364 429 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.2□□□□□ -0.32e-7■□□□□ 10
SF3A1-201ENST00000215793 CNKSR3Q6P9H4 555 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 AGTRAPQ6RW13 159 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ARMC10Q8N2F6 343 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 YIPF4Q9BSR8 244 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 UCK2Q9BZX2 261 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 DCSTAMPQ9H295 470 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 MARCH7Q9H992 704 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 POPDC3Q9HBV1 291 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 Q9N2J8 555 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM248Q9NWD8 314 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF224Q9NZL3 707 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 MALT1Q9UDY8 824 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 UTS2RQ9UKP6 389 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TELO2Q9Y4R8 837 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 LRRC42Q9Y546 428 aa13.2□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM233B4DJY2 109 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 OPN1SWP03999 348 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 BCHEP06276 602 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TPTEP56180 551 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TUBA1BP68363 451 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TUBA4AP68366 448 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CRHR2Q13324 411 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 GPM6BQ13491 265 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TUBA3CQ13748 450 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF234Q14588 700 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CCL14Q16627 93 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 GFOD2Q3B7J2 385 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 C10orf62Q5T681 223 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SLC39A4Q6P5W5 647 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SLC2A7Q6PXP3 512 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TUBA1AQ71U36 451 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ERMP1Q7Z2K6 904 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PIM3Q86V86 326 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 OR5AK3PQ8NH89 298 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PYURFQ96I23 114 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SIGLEC10Q96LC7 697 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ITPAQ9BY32 194 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ELAC1Q9H777 363 aaKnown RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 MAGEE1Q9HCI5 957 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 A0A0J9YVX5 310 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms