RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NXPE1Q8N323 547 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 FBLIM1Q8WUP2 373 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 Q96MT0 163 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 CENPOQ9BU64 300 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TTLL2Q9BWV7 592 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 SPNS1Q9H2V7 528 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 MAGEE1Q9HCI5 957 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ABCB10Q9NRK6 738 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 A0A1W2PQ45 241 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 A0A1W2PQY0 241 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 SNRNP200O75643 2136 aaKnown RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 UGT2B4P06133 528 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 PDHA2P29803 388 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 S100A3P33764 101 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TRIM16LQ309B1 348 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 UBE2R2Q712K3 238 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 GAREM2Q75VX8 874 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 NAGSQ8N159 534 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ZNF555Q8NEP9 628 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 UGT2B28Q9BY64 529 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TRIT1Q9H3H1 467 aaKnown RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 SPC25Q9HBM1 224 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 SAMHD1Q9Y3Z3 626 aaKnown RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 PCDHGA6Q9Y5G7 932 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 SMIM30A4D0T7 59 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 WASHC1A8K0Z3 465 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 AQP9O43315 295 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 SEMA7AO75326 666 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 KCNK2O95069 426 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 FKBP9O95302 570 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 NTN1O95631 604 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 HLA-FP30511 346 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 MAGEA2P43356 314 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ATN1P54259 1190 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 PFN3P60673 137 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 LEXMQ3ZCV2 418 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TTC23Q5W5X9 447 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 NOXRED1Q6NXP6 359 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 WASH2PQ6VEQ5 465 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 FKBP9P1Q75LS8 142 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 CYP2U1Q7Z449 544 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 MEX3DQ86XN8 651 aaKnown RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 TTC29Q8NA56 475 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 ZNF740Q8NDX6 193 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 OR5K1Q8NHB7 308 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 CIDECQ96AQ7 238 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 PDLIM5Q96HC4 596 aaKnown RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 PPP3R2Q96LZ3 170 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ZNF347Q96SE7 839 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TUBA1CQ9BQE3 449 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ROGDIQ9GZN7 287 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 IL1RAPQ9NPH3 570 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 MRGBPQ9NV56 204 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 TMEM161AQ9NX61 479 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 GULP1Q9UBP9 304 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 PCYT1BQ9Y5K3 369 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 SLC16A6O15403 523 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 TBX1O43435 398 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 AOC2O75106 756 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NME6O75414 186 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 CLDN9O95484 217 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 GADD45AP24522 165 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NR4A2P43354 598 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 SELENBP1Q13228 472 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 IRF3Q14653 427 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 MAD2L1BPQ15013 274 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 MPEG1Q2M385 716 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 RBM48Q5RL73 367 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 LRIF1Q5T3J3 769 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 LGALS12Q96DT0 336 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 C7orf34Q96L11 122 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NTMT1Q9BV86 223 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ITM2BQ9Y287 266 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 FRYQ5TBA9 3013 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 LOC100506127A0A0U1RQW1 187 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 MAGEB17A8MXT2 336 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 CLDN25C9JDP6 229 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ETFAP13804 333 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 CD36P16671 472 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ZNF7P17097 686 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 AMD1P17707 334 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ITIH1P19827 911 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 RAE1P78406 368 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 ABRQ12979 859 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 MFSD14CQ5VZR4 134 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 OR2T5Q6IEZ7 315 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NCCRP1Q6ZVX7 275 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 LRRC8DQ7L1W4 858 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 DNAJB7Q7Z6W7 309 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 OR2T29Q8NH02 315 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 UCN3Q969E3 161 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 YIPF2Q9BWQ6 316 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 THUMPD1Q9NXG2 353 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 USE1Q9NZ43 259 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 C3orf18Q9UK00 162 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 GMPPBQ9Y5P6 360 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 TRBV5-4A0A0C4DH59 114 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 PTHP01270 115 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 CTSCP53634 463 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 CLDN8P56748 225 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms