RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KIR2DS3	Q14952	304 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ANGPT1	Q15389	498 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	DUOXA1	Q1HG43	343 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	KIF19	Q2TAC6	998 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	LACTB2	Q53H82	288 aa	Predicted RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	SGO1	Q5FBB7	561 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CATSPERE	Q5SY80	951 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	FAM219B	Q5XKK7	198 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ICE2	Q659A1	982 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	OGFOD2	Q6N063	350 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	MED27	Q6P2C8	311 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	OGFOD3	Q6PK18	319 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823		Q6ZSR9	355 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	TMPRSS11B	Q86T26	416 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ADGRF3	Q8IZF5	1079 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	KRT78	Q8N1N4	520 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ZNF548	Q8NEK5	533 aa	Predicted RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ABHD11	Q8NFV4	315 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	OR4K1	Q8NGD4	311 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	OR2A1	Q8NGT9	310 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	OR2T11	Q8NH01	316 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CEP76	Q8TAP6	659 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	WDR20	Q8TBZ3	569 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	SELENOM	Q8WWX9	145 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PATE1	Q8WXA2	126 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PIGK	Q92643	395 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	UBE2E3	Q969T4	207 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	MTFMT	Q96DP5	389 aa	Known RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ACAT2	Q9BWD1	397 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	TWSG1	Q9GZX9	223 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ZNF385D	Q9H6B1	395 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	FARSB	Q9NSD9	589 aa	Known RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	GEMIN8	Q9NWZ8	242 aa	Known RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	TAC3	Q9UHF0	121 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	SH2B3	Q9UQQ2	575 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	TSC22D4	Q9Y3Q8	395 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PCDHGA2	Q9Y5H1	932 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823		B4DGG1	531 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	DFNA5	O60443	496 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PEX11A	O75192	247 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CHRM5	P08912	532 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	HSD3B1	P14060	373 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	HSD3B2	P26439	372 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	VARS	P26640	1264 aa	Known RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CMPK1	P30085	196 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ARRB1	P49407	418 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ATP4B	P51164	291 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CCR8	P51685	355 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ERVK-8	P63133	956 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	BNIP1	Q12981	228 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CSTF3	Q12996	717 aa	Known RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	SIM2	Q14190	667 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PLCL1	Q15111	1095 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	IMPG1	Q17R60	797 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ATP6AP1L	Q52LC2	224 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	C6orf136	Q5SQH8	315 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	TMEM26	Q6ZUK4	368 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	C17orf82	Q86X59	251 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	FAM129C	Q86XR2	697 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PARP9	Q8IXQ6	854 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	LAS2	Q8IYD9	372 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	OR7G3	Q8NG95	312 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PRR11	Q96HE9	360 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	NSL1	Q96IY1	281 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PPP3R2	Q96LZ3	170 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CATSPER2	Q96P56	530 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ELF4	Q99607	663 aa	Predicted RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	AIF1L	Q9BQI0	150 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	NT5DC2	Q9H857	520 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	UCK1	Q9HA47	277 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	BRF2	Q9HAW0	419 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	MRPS30	Q9NP92	439 aa	Known RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	TMEM184C	Q9NVA4	438 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ARMCX1	Q9P291	453 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ADGRE2	Q9UHX3	823 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	G3BP2	Q9UN86	482 aa	Known RBP	11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	CCL27	Q9Y4X3	112 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	ENTPD2	Q9Y5L3	495 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	RALGAPA1	Q6GYQ0	2036 aa		11.34	□□□□□ -0.59
CLN6-223	ENST00000637823	PIPSL	A2A3N6	862 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	OR6C74	A6NCV1	312 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	ISM1	B1AKI9	464 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	NPIPB8	E9PQR5	432 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823		H7BY64	318 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	FOXE1	O00358	373 aa	Predicted RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	BTN3A3	O00478	584 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	LSM1	O15116	133 aa	Known RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	FKBP9	O95302	570 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	PCSK2	P16519	638 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	PRPH2	P23942	346 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	PSMB5	P28074	263 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	FASLG	P48023	281 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	NEK2	P51955	445 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	NUBP1	P53384	320 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	PHEX	P78562	749 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	HHEX	Q03014	270 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	EMX2	Q04743	252 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	KLF10	Q13118	480 aa		11.33	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms