RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 OR8K5Q8NH50 307 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 PMEPA1Q969W9 287 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 ZNF501Q96CX3 271 aaPredicted RBP18.58■□□□□ 0.56
UPF1-209ENST00000600310 TEFMQ96QE5 360 aaKnown RBP18.58■□□□□ 0.56
UPF1-209ENST00000600310 ZPBPQ9BS86 351 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 ASPSCR1Q9BZE9 553 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 MRPL46Q9H2W6 279 aaKnown RBP18.58■□□□□ 0.56
UPF1-209ENST00000600310 THSD1Q9NS62 852 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 TMEM216Q9P0N5 145 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 RARRES3Q9UL19 164 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 SNX7Q9UNH6 387 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 SH2B3Q9UQQ2 575 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 B3GALT1Q9Y5Z6 326 aa18.58■□□□□ 0.56
UPF1-209ENST00000600310 GLRA3O75311 464 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 STK16O75716 305 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 WDR47O94967 919 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 KRT4P19013 534 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 GDF5P43026 501 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 HSPA7P48741 367 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 RELAQ04206 551 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 TBC1D25Q3MII6 688 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 ZC3H12BQ5HYM0 836 aaKnown RBP18.57■□□□□ 0.56
UPF1-209ENST00000600310 PAQR7Q86WK9 346 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 UBTD2Q8WUN7 234 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 ESAMQ96AP7 390 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 ZNF578Q96N58 590 aaPredicted RBP18.57■□□□□ 0.56
UPF1-209ENST00000600310 FCRL4Q96PJ5 515 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 CTRCQ99895 268 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 CD244Q9BZW8 370 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 FANCEQ9HB96 536 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 TMEM184CQ9NVA4 438 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 CUEDC1Q9NWM3 386 aaPredicted RBP18.57■□□□□ 0.56
UPF1-209ENST00000600310 TMCO1Q9UM00 188 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 PLCL2Q9UPR0 1127 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 KCNE2Q9Y6J6 123 aa18.57■□□□□ 0.56
UPF1-209ENST00000600310 H7BY64 318 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 TK2O00142 265 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 HCRTR1O43613 425 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 NRP2O60462 931 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CTSVO60911 334 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CAPNS1P04632 268 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 SBK3P0C264 359 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 GFAPP14136 432 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 H2AFXP16104 143 aaPredicted RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 SLC5A2P31639 672 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CRHR1P34998 444 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CCT5P48643 541 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 ALDH18A1P54886 795 aaKnown RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 SETDB1Q15047 1291 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 PFKFB4Q16877 469 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.56■□□□□ 0.56
UPF1-209ENST00000600310 FBXO48Q5FWF7 155 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CEP85LQ5SZL2 805 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 FBXO42Q6P3S6 717 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 RNF44Q7L0R7 432 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 PPP1R3BQ86XI6 285 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 MCATQ8IVS2 390 aaKnown RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 ABHD11Q8NFV4 315 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 PRAP1Q96NZ9 151 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CCDC86Q9H6F5 360 aaKnown RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 ARGLU1Q9NWB6 273 aaPredicted RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 FOXJ2Q9P0K8 574 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 CPSF2Q9P2I0 782 aaKnown RBP18.56■□□□□ 0.56
UPF1-209ENST00000600310 PILRAQ9UKJ1 303 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 DYRK1BQ9Y463 629 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 ANKRD12Q6UB98 2062 aa18.56■□□□□ 0.56
UPF1-209ENST00000600310 C1QTNF9BB2RNN3 333 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 TMEM150CB9EJG8 249 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 C1QTNF9P0C862 333 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 CDH1P12830 882 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 AGTR2P50052 363 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 CSNK1G2P78368 415 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 CASP8Q14790 479 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 DEFB110Q30KQ9 67 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 C16orf46Q6P387 395 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 UNQ6494/PRO21346Q6UXR6 183 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 LRRC70Q7Z2Q7 622 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 ADCK2Q7Z695 626 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 C4orf33Q8N1A6 199 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 OR1L3Q8NH93 324 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 MDM1Q8TC05 714 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 SLC5A11Q8WWX8 675 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 NEIL2Q969S2 332 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 CAPS2Q9BXY5 557 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 DNAJC11Q9NVH1 559 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 MKS1Q9NXB0 559 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 GPRC5BQ9NZH0 403 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 SERTAD3Q9UJW9 196 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 ACSL6Q9UKU0 697 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 GRID1Q9ULK0 1009 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 ASB1Q9Y576 335 aa18.55■□□□□ 0.56
UPF1-209ENST00000600310 STX16-NPEPL1H3BU86 382 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 STX16O14662 325 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 RGS16O15492 202 aaPredicted RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 SRPX2O60687 465 aaPredicted RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 SMIM24O75264 130 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 EZRP15311 586 aaKnown RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 CD82P27701 267 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 CCR8P51685 355 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 CDC16Q13042 620 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms