RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TMIGD1Q6UXZ0 262 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 GTF2IRD2Q86UP8 949 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 LPGAT1Q92604 370 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 ZDHHC7Q9NXF8 308 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 CDH22Q9UJ99 828 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 CIB4A0PJX0 185 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 ANKRD66B4E2M5 251 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 PGRP06401 933 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 PRKCHP24723 683 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 SEMA3AQ14563 771 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 TCTE1Q5JU00 501 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 CXorf57Q6NSI4 855 aaKnown RBP19.94■□□□□ 0.78
UPF1-207ENST00000599848 LYSMD3Q7Z3D4 306 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 GPAT4Q86UL3 456 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 FTMTQ8N4E7 242 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 GPR174Q9BXC1 333 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 FLRT1Q9NZU1 646 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 KCNK6Q9Y257 313 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 MAU2Q9Y6X3 613 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 HEPACAM2A8MVW5 462 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 MAP2K7O14733 419 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 SCGNO76038 276 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 DCTN2Q13561 401 aaKnown RBP19.94■□□□□ 0.78
UPF1-207ENST00000599848 OR6K6Q8NGW6 343 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 DTLQ9NZJ0 730 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 EPHA6Q9UF33 1036 aa19.94■□□□□ 0.78
UPF1-207ENST00000599848 COL14A1Q05707 1796 aaKnown RBP19.94■□□□□ 0.78
UPF1-207ENST00000599848 B4GALT2O60909 372 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 RNGTTO60942 597 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 UBAP2LQ14157 1087 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 THOC6Q86W42 341 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 GPR65Q8IYL9 337 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 APOBEC3BQ9UH17 382 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 NENFQ9UMX5 172 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 CXCR6O00574 342 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 BCAS2O75934 225 aaPredicted RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 IQCF3P0C7M6 154 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 CSF2RAP15509 400 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 TXNL4AP83876 142 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 ARF5P84085 180 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 FSTL4Q6MZW2 842 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 GK5Q6ZS86 529 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 GALNTL5Q7Z4T8 443 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 SERINC5Q86VE9 423 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 KCT2Q8NC54 265 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 PIAS3Q9Y6X2 628 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 SLC16A5O15375 505 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 GJA1P17302 382 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 JUNDP17535 347 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 MATN1P21941 496 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 CREB5Q02930 508 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 ST3GAL3Q11203 375 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 RUNX3Q13761 415 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 ARFRP1Q13795 201 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 NPTX1Q15818 432 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 YTHDF3Q7Z739 585 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 GEMIN6Q8WXD5 167 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 TFAP2BQ92481 460 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 NPLQ9BXD5 320 aaPredicted RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 TAS2R9Q9NYW1 312 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 LDB2O43679 373 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 CYP11A1P05108 521 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 GLP1RP43220 463 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 BDH1Q02338 343 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 SLC36A3Q495N2 470 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 PGM2L1Q6PCE3 622 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 NXPE1Q8N323 547 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 OR52E4Q8NGH9 312 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 PHOSPHO1Q8TCT1 267 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 POLR2J3Q9H1A7 115 aaKnown RBP19.93■□□□□ 0.78
UPF1-207ENST00000599848 OR51V1Q9H2C8 321 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 SEC61A2Q9H9S3 476 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 CENPMQ9NSP4 180 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 DMAC2Q9NW81 257 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 FADS3Q9Y5Q0 445 aa19.93■□□□□ 0.78
UPF1-207ENST00000599848 WTIPA6NIX2 430 aaPredicted RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 PLD2O14939 933 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 CDKN1CP49918 316 aaPredicted RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 RCAN2Q14206 197 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 ARL13AQ5H913 290 aaPredicted RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 LDB1Q86U70 411 aaPredicted RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 PYROXD2Q8N2H3 581 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 TRAM1L1Q8N609 369 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 NANOS1Q8WY41 292 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 C1orf74Q96LT6 269 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 PAK6Q9NQU5 681 aaPredicted RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 ZNF639Q9UID6 485 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 ZNF623O75123 536 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 S100A9P06702 114 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 HERVK_113P63132 956 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 PDK3Q15120 406 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 SEC23BQ15437 767 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 MFSD5Q6N075 450 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 DCP2Q8IU60 420 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 POC5Q8NA72 575 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 ERVK-6Q9BXR3 956 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 UBAP1Q9NZ09 502 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 GJE1A6NN92 205 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 C9P02748 559 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 CYP4B1P13584 511 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms