RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 EXTL1Q92935 676 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 FBXL8Q96CD0 374 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 MTO1Q9Y2Z2 717 aaKnown RBP15.45■□□□□ 0.06
TRIM28-213ENST00000598355 A0A1B0GX78 115 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 C1QL1O75973 258 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 CSRP3P50461 194 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 ARSFP54793 590 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 EMP3P54852 163 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 RPS18P62269 152 aaKnown RBP15.44■□□□□ 0.06
TRIM28-213ENST00000598355 CDKL1Q00532 357 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 IL10RAQ13651 578 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 GRM7Q14831 915 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 UGT8Q16880 541 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 PRTGQ2VWP7 1150 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 ATP1A1-AS1Q5TC04 95 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 PRAMEF13Q5VWM6 474 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 FBXO42Q6P3S6 717 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 BORAQ6PGQ7 559 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 CEP128Q6ZU80 1094 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 ARHGEF39Q8N4T4 335 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 OR56A3Q8NH54 315 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 FBF1Q8TES7 1133 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 OR2A5Q96R48 311 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 C17orf62Q9BQA9 187 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 SELENOSQ9BQE4 189 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 DHRS4Q9BTZ2 278 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 SEMA4CQ9C0C4 833 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 DERL2Q9GZP9 239 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 PCBD2Q9H0N5 130 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 GPAMQ9HCL2 828 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 SLC22A11Q9NSA0 550 aa15.44■□□□□ 0.06
TRIM28-213ENST00000598355 CUEDC1Q9NWM3 386 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-213ENST00000598355 DHCR7Q9UBM7 475 aaKnown RBP15.44■□□□□ 0.06
TRIM28-213ENST00000598355 FARSAQ9Y285 508 aaKnown RBP15.44■□□□□ 0.06
TRIM28-213ENST00000598355 LOC105369274A0A096LPK9 316 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 LOC102723532A0A0G2JNH3 316 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 DSCR3O14972 297 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 KLF7O75840 302 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 PRKAR1AP10644 381 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 HRH2P25021 359 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 RPS15P62841 145 aaKnown RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 EFTUD2Q15029 972 aaKnown RBP eCLIP15.43■□□□□ 0.061e-13■■■■■ 97.8
TRIM28-213ENST00000598355 TAF1BQ53T94 588 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 UBAP2Q5T6F2 1119 aaKnown RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 GRTP1Q5TC63 336 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 MRPL14Q6P1L8 145 aaKnown RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 LCTLQ6UWM7 567 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 ADAMTSL2Q86TH1 951 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 OR4N4Q8N0Y3 316 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 ENDOVQ8N8Q3 282 aaKnown RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 EXD3Q8N9H8 876 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 FKBP10Q96AY3 582 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 TSPAN17Q96FV3 270 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 UBXN10Q96LJ8 280 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 FMO2Q99518 471 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 NDC1Q9BTX1 674 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 TSPYL1Q9H0U9 437 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 NINJ2Q9NZG7 142 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 TXNDC16Q9P2K2 825 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 MTRF1LQ9UGC7 380 aaKnown RBP15.43■□□□□ 0.06
TRIM28-213ENST00000598355 TUBD1Q9UJT1 453 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 TCFL5Q9UL49 500 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 SNX7Q9UNH6 387 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 SH2B3Q9UQQ2 575 aa15.43■□□□□ 0.06
TRIM28-213ENST00000598355 A0A0J9YVX5 310 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 NPEPPSL1A6NEC2 478 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CDC7O00311 574 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 HAT1O14929 419 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CNOT3O75175 753 aaKnown RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 KATNA1O75449 491 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 MED26O95402 600 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 HIST1H2AGP0C0S8 130 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 HIST1H2ADP20671 130 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 AGXTP21549 392 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 SPRP35270 261 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 VSX2P58304 361 aaPredicted RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 DCDP81605 110 aaKnown RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 NFKB2Q00653 900 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 NAE1Q13564 534 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 NKAIN1Q4KMZ8 207 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 WASHC2DQ5SRD0 308 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 COX15Q7KZN9 410 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CTAGE3PQ8IX95 158 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 KLHDC8AQ8IYD2 350 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 PPM1NQ8N819 430 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 ATL1Q8WXF7 558 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 MED8Q96G25 268 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 HIST1H2AHQ96KK5 128 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 C10orf90Q96M02 699 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 OR4K3Q96R72 315 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 HIST1H2AJQ99878 128 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 H2AFJQ9BTM1 129 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 SARGQ9BW04 601 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 SLC7A5P2Q9GIP4 190 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 ATG10Q9H0Y0 220 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 ADNPQ9H2P0 1102 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CDC42EP4Q9H3Q1 356 aaKnown RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 ACSS3Q9H6R3 686 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CAB39LQ9H9S4 337 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 CUTCQ9NTM9 273 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms