RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 BNIP3Q12983 259 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SLBPQ14493 270 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 KIR2DS3Q14952 304 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SHBQ15464 509 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 DEFB133Q30KQ1 61 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SGO1Q5FBB7 561 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 C10orf62Q5T681 223 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 FAM91A1Q658Y4 838 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 MED27Q6P2C8 311 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CCDC121Q6ZUS5 278 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CHSY3Q70JA7 882 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SPATA19Q7Z5L4 167 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CLNKQ7Z7G1 428 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 ADGRF3Q8IZF5 1079 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 KRT78Q8N1N4 520 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 ARL14Q8N4G2 192 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 WDR20Q8TBZ3 569 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 MTFMTQ96DP5 389 aaKnown RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 PITHD1Q9GZP4 211 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 TWSG1Q9GZX9 223 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SAR1AQ9NR31 198 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 FARSBQ9NSD9 589 aaKnown RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 MRGBPQ9NV56 204 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 GEMIN8Q9NWZ8 242 aaKnown RBP13.19□□□□□ -0.3
CCDC40-209ENST00000573474 SPHK1Q9NYA1 384 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 TNRC6BQ9UPQ9 1833 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 A0A1B0GTQ1 180 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PIPSLA2A3N6 862 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 OR6C74A6NCV1 312 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 ISM1B1AKI9 464 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 BTN3A3O00478 584 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 YKT6O15498 198 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PRR35P0CG20 571 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 HRH2P25021 359 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 CMPK1P30085 196 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PEBP1P30086 187 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 FASLGP48023 281 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 MAZP56270 477 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 GRIK2Q13002 908 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 SF1Q15637 639 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 IMPG1Q17R60 797 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 ATP6AP1LQ52LC2 224 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 OGFOD2Q6N063 350 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 Q6ZSR9 355 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 YTHDF3Q7Z739 585 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 FAM129CQ86XR2 697 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 LAS2Q8IYD9 372 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 SLC25A45Q8N413 288 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 CPSF7Q8N684 471 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 GPR156Q8NFN8 814 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 OR7G3Q8NG95 312 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 OR4K1Q8NGD4 311 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 OR2T11Q8NH01 316 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PRR11Q96HE9 360 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 LOXL4Q96JB6 756 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PPP3R2Q96LZ3 170 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 AIF1LQ9BQI0 150 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 TUBB6Q9BUF5 446 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 NT5DC2Q9H857 520 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 CAPN10Q9HC96 672 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 MRPS30Q9NP92 439 aaKnown RBP13.18□□□□□ -0.3
CCDC40-209ENST00000573474 TMEM184CQ9NVA4 438 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 SLC6A14Q9UN76 642 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 TSC22D4Q9Y3Q8 395 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 CCL27Q9Y4X3 112 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 ENTPD2Q9Y5L3 495 aa13.18□□□□□ -0.3
CCDC40-209ENST00000573474 PRR33A8MZF0 331 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 H7BY64 318 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 PEX11AO75192 247 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 KIAA0754O94854 1291 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 UBOX5O94941 541 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 PCNAP12004 261 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 HSD3B1P14060 373 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 HSD3B2P26439 372 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 EPHA8P29322 1005 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 NEK2P51955 445 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 YBX1P67809 324 aaKnown RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 IRX1P78414 480 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 CSTF3Q12996 717 aaKnown RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 BIRC2Q13490 618 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 UBAP2LQ14157 1087 aaKnown RBP13.17□□□□□ -0.3
CCDC40-209ENST00000573474 KRT72Q14CN4 511 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 NR6A1Q15406 480 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 SMU1Q2TAY7 513 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 HLA-BQ31612 363 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 GALNTL6Q49A17 601 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 C14orf28Q4W4Y0 310 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 C6orf136Q5SQH8 315 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 C6orf132Q5T0Z8 1188 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 TMEM198Q66K66 360 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 SLC23A3Q6PIS1 610 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 OR2L3Q8NG85 312 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 PRAP1Q96NZ9 151 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 CATSPER2Q96P56 530 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 HBEGFQ99075 208 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 CCDC106Q9BWC9 280 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 ZNF385DQ9H6B1 395 aa13.17□□□□□ -0.3
CCDC40-209ENST00000573474 BRF2Q9HAW0 419 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms