RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CATSPER1Q8NEC5 780 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 STT3BQ8TCJ2 826 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 GRHL3Q8TE85 626 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 LPGAT1Q92604 370 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 DLG3Q92796 817 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 RAD51AP1Q96B01 352 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SLC22A18Q96BI1 424 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 C8orf44Q96CB5 159 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 MFSD3Q96ES6 412 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 ALS2CR12Q96Q35 445 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SLC30A3Q99726 388 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 MIPEPQ99797 713 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SLX1AQ9BQ83 275 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 KIFC1Q9BW19 673 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 FRMD8P1Q9BZ68 369 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 LHPPQ9H008 270 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 VIPAS39Q9H9C1 493 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 EIF2B3Q9NR50 452 aaKnown RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 IRAK4Q9NWZ3 460 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 SYBUQ9NX95 663 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 CDC23Q9UJX2 597 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 TTC7AQ9ULT0 858 aaPredicted RBP6.41□□□□□ -1.38
VPS53-213ENST00000572334 ZNF148Q9UQR1 794 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 MED16Q9Y2X0 877 aa6.41□□□□□ -1.38
VPS53-213ENST00000572334 OTOGQ6ZRI0 2925 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 POLQO75417 2590 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 DNAJC13O75165 2243 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ARHGEF33A8MVX0 844 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 GOLGA8KD6RF30 607 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 H0YGG7 62 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 GOLGA8TH3BQL2 631 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 FFAR3O14843 346 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 SNPHO15079 494 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 GPR42O15529 346 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 FOXS1O43638 330 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 KDM1AO60341 852 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 SRPX2O60687 465 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 PSIP1O75475 530 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 WISP2O76076 250 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 RPN2P04844 631 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 CELA2AP08217 269 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ZGLP1P0C6A0 271 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 PRF1P14222 555 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 MGAT1P26572 445 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 KCNJ1P48048 391 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 TTPAP49638 278 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ARF3P61204 181 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 KCNJ11Q14654 390 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ZNF169Q14929 603 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 CCNG2Q16589 344 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ACSBG2Q5FVE4 666 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 SEL1L2Q5TEA6 688 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 MEI1Q5TIA1 1274 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 AGAP7PQ5VUJ5 663 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 C1QL3Q5VWW1 255 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ZNF425Q6IV72 752 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 RPUSD3Q6P087 351 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 DRICH1Q6PGQ1 229 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 CNSTQ6PJW8 725 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 CENPUQ71F23 418 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 PAQR7Q86WK9 346 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 EGFL6Q8IUX8 553 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 LRRC56Q8IYG6 542 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 AGGF1Q8N302 714 aaeCLIP6.4□□□□□ -1.38
VPS53-213ENST00000572334 C17orf53Q8N3J3 647 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 MPP5Q8N3R9 675 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 RNF10Q8N5U6 811 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 AMER3Q8N944 861 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 TTC29Q8NA56 475 aaPredicted RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 PPHLN1Q8NEY8 458 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 DNAJB14Q8TBM8 379 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 FAR1Q8WVX9 515 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 TM9SF4Q92544 642 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 FAM136AQ96C01 138 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 THOC3Q96J01 351 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 C5orf34Q96MH7 638 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 AGAP4Q96P64 663 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 OR2A5Q96R48 311 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 TAAR6Q96RI8 345 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 TTC1Q99614 292 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 DPH7Q9BTV6 452 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 CRB3Q9BUF7 120 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 MRM3Q9HC36 420 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 ZNF304Q9HCX3 659 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 BATF3Q9NR55 127 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 SEMA3GQ9NS98 782 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 INTS7Q9NVH2 962 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 IL1RAPL1Q9NZN1 696 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 PAK5Q9P286 719 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 ZC3H7BQ9UGR2 993 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 GNPTGQ9UJJ9 305 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 SLC39A10Q9ULF5 831 aa6.4□□□□□ -1.38
VPS53-213ENST00000572334 RUVBL1Q9Y265 456 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 DRG1Q9Y295 367 aaKnown RBP6.4□□□□□ -1.38
VPS53-213ENST00000572334 F8P00451 2351 aa6.4□□□□□ -1.39
VPS53-213ENST00000572334 LOC102723996A0A087X1L8 192 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 TTC36A6NLP5 189 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 E7EVH7 732 aa6.39□□□□□ -1.39
VPS53-213ENST00000572334 P2RX6O15547 441 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms