RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ACY1Q03154 408 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 RELAQ04206 551 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 PRDX1Q06830 199 aaKnown RBP19.82■□□□□ 0.76
VPS53-210ENST00000571456 C16orf72Q14CZ0 275 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 SNAP47Q5SQN1 464 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 METTL2BQ6P1Q9 378 aaKnown RBP19.82■□□□□ 0.76
VPS53-210ENST00000571456 KLHDC8AQ8IYD2 350 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 D2HGDHQ8N465 521 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 OR2A1Q8NGT9 310 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 OR8K5Q8NH50 307 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 PTERQ96BW5 349 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 ATOH8Q96SQ7 321 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 MRPL57Q9BQC6 102 aaKnown RBP19.82■□□□□ 0.76
VPS53-210ENST00000571456 ZPBPQ9BS86 351 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 SGPP1Q9BX95 441 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 ALG9Q9H6U8 611 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 PDE7BQ9NP56 450 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 FBXO8Q9NRD0 319 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 LOXL2Q9Y4K0 774 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 HEATR5BQ9P2D3 2071 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 A0A1W2PPV9 198 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 TLDC2A0PJX2 215 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 CASC3O15234 703 aaKnown RBP19.81■□□□□ 0.76
VPS53-210ENST00000571456 SUV39H1O43463 412 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 GUCA1CO95843 209 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 JMJD7P0C870 316 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 PEBP1P30086 187 aaKnown RBP19.81■□□□□ 0.76
VPS53-210ENST00000571456 CCT5P48643 541 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 TBPL1P62380 186 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 DLG1Q12959 904 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 UBAP2LQ14157 1087 aaKnown RBP19.81■□□□□ 0.76
VPS53-210ENST00000571456 OR4D1Q15615 310 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 THEMIS2Q5TEJ8 643 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 TMEM164Q5U3C3 297 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 LCTLQ6UWM7 567 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 OR2L3Q8NG85 312 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 GPR78Q96P69 363 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 TRAPPC9Q96Q05 1148 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 TEFMQ96QE5 360 aaKnown RBP19.81■□□□□ 0.76
VPS53-210ENST00000571456 CAPS2Q9BXY5 557 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 ASPSCR1Q9BZE9 553 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 FANCEQ9HB96 536 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 CD274Q9NZQ7 290 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 CIDEBQ9UHD4 219 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 IKZF3Q9UKT9 509 aa19.81■□□□□ 0.76
VPS53-210ENST00000571456 IGHV5-51A0A0C4DH38 117 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 SMIM23A6NLE4 172 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 A8MU76 341 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 KIF1CO43896 1103 aaKnown RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 GLRA3O75311 464 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 MPSTP25325 297 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 RBMS1P29558 406 aaKnown RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 PPP1CAP62136 330 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 IRF9Q00978 393 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 MC2RQ01718 297 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 IL11RAQ14626 422 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 PRAMEF13Q5VWM6 474 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 ICE2Q659A1 982 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 SPATA6LQ8N4H0 392 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 C19orf47Q8N9M1 422 aaKnown RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 RCBTB1Q8NDN9 531 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 OR2W6PQ8NHA6 318 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 RHBDF1Q96CC6 855 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 FCRL4Q96PJ5 515 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 DDA1Q9BW61 102 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 STMN4Q9H169 189 aaPredicted RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 MRPL46Q9H2W6 279 aaKnown RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 MRPS30Q9NP92 439 aaKnown RBP19.8■□□□□ 0.76
VPS53-210ENST00000571456 PCMTD2Q9NV79 361 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 SOHLH2Q9NX45 425 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 SNX7Q9UNH6 387 aa19.8■□□□□ 0.76
VPS53-210ENST00000571456 SLC9B1P1A6NJY1 282 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 NAE1Q13564 534 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 FASTKQ14296 549 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 LINC00303Q3SY05 128 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 KRT71Q3SY84 523 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 TECRLQ5HYJ1 363 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 ZC3H12BQ5HYM0 836 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 C3orf38Q5JPI3 329 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 ALKBH8Q96BT7 664 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 TAAR9Q96RI9 348 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 MKS1Q9NXB0 559 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 SIDT1Q9NXL6 827 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 TAC3Q9UHF0 121 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 SATB2Q9UPW6 733 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 PCDHGA3Q9Y5H0 932 aa19.79■□□□□ 0.76
VPS53-210ENST00000571456 TNPO3Q9Y5L0 923 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 ANKRD17O75179 2603 aaKnown RBP19.79■□□□□ 0.76
VPS53-210ENST00000571456 KLK8O60259 260 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 PYGBP11216 843 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 ST6GAL1P15907 406 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 CD82P27701 267 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 SLC6A12P48065 614 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 SEPHS1P49903 392 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 ZNF844Q08AG5 666 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 SUSD1Q6UWL2 747 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 CEACAM20Q6UY09 585 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 TAX1BP1Q86VP1 789 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 C17orf64Q86WR6 236 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 PLD6Q8N2A8 252 aaKnown RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms