RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 WHAMMP3Q1A5X7 153 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ZXDCQ2QGD7 858 aaPredicted RBP14.39□□□□□ -0.11
VPS39-210ENST00000568357 MLIPQ5VWP3 458 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ZNF425Q6IV72 752 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 C3orf62Q6ZUJ4 267 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 TTLL10Q6ZVT0 673 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 CYS1Q717R9 158 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 RNF44Q7L0R7 432 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 TMEM151BQ8IW70 566 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 MYO1HQ8N1T3 1032 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 PROKR1Q8TCW9 393 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ADAMTS17Q8TE56 1095 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 PLCD4Q9BRC7 762 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 SLC22A11Q9NSA0 550 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 SRPK3Q9UPE1 567 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 POLHQ9Y253 713 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 BOD1L1Q8NFC6 3051 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 FAM95CA0A1B0GW59 222 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 FITM1A5D6W6 292 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 CNOT3O75175 753 aaKnown RBP14.38□□□□□ -0.11
VPS39-210ENST00000568357 MED26O95402 600 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 MAGEA4P43358 317 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 FOXL2P58012 376 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 TAS2R39P59534 338 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 KCNAB2Q13303 367 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 SP140Q13342 867 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 ZNF460Q14592 562 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 GRM7Q14831 915 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 SLC9A5Q14940 896 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 NKAIN1Q4KMZ8 207 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 TCTE1Q5JU00 501 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 PAQR7Q86WK9 346 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 CCDC25Q86WR0 208 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 CEP97Q8IW35 865 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 DTWD1Q8N5C7 304 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 SEC14L1Q92503 715 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 PDLIM5Q96HC4 596 aaKnown RBP14.38□□□□□ -0.11
VPS39-210ENST00000568357 ZFYVE21Q9BQ24 234 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 ATG10Q9H0Y0 220 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 ADNPQ9H2P0 1102 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 RHOJQ9H4E5 214 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 CUTCQ9NTM9 273 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 TXLNGQ9NUQ3 528 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 CUEDC1Q9NWM3 386 aaPredicted RBP14.38□□□□□ -0.11
VPS39-210ENST00000568357 SNX7Q9UNH6 387 aa14.38□□□□□ -0.11
VPS39-210ENST00000568357 USP9XQ93008 2570 aaPredicted RBP14.38□□□□□ -0.11
VPS39-210ENST00000568357 HYKKA2RU49 373 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 FAM159BA6NKW6 160 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 C9J4A7 227 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 H0YGG7 62 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 H7BY64 318 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 EIF2S1P05198 315 aaKnown RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 SFTPCP11686 197 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 ARSFP54793 590 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 ARF3P61204 181 aaPredicted RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 ABATP80404 500 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 GUCY2DQ02846 1103 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 THEMIS2Q5TEJ8 643 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 C8orf74Q6P047 294 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 MRPL14Q6P1L8 145 aaKnown RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 AGTRAPQ6RW13 159 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 ATG14Q6ZNE5 492 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 NOA1Q8NC60 698 aaKnown RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 ABHD17AQ96GS6 310 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 VPS39Q96JC1 886 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 PRAP1Q96NZ9 151 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 OR2A5Q96R48 311 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 PHACTR1Q9C0D0 580 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 LRRC4CQ9HCJ2 640 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 ZDHHC18Q9NUE0 388 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 NSMCE4AQ9NXX6 385 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 IFT80Q9P2H3 777 aaPredicted RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 NDOR1Q9UHB4 597 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 SH2B3Q9UQQ2 575 aa14.37□□□□□ -0.11
VPS39-210ENST00000568357 MTO1Q9Y2Z2 717 aaKnown RBP14.37□□□□□ -0.11
VPS39-210ENST00000568357 A0A1B0GX78 115 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 DSCR3O14972 297 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 CCNDBP1O95273 360 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 ONECUT2O95948 504 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 GSTA2P09210 222 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 HIST1H2AGP0C0S8 130 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 GP1BBP13224 206 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 NPPBP16860 134 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 ZNF37AP17032 561 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 HIST1H2ADP20671 130 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 TBPL1P62380 186 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 RELAQ04206 551 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 NAE1Q13564 534 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 NAA25Q14CX7 972 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 FAM214AQ32MH5 1076 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 YOD1Q5VVQ6 348 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 SBSNQ6UWP8 590 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 PLD3Q8IV08 490 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 MMGT1Q8N4V1 131 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 METTL27Q8N6F8 245 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 TTC29Q8NA56 475 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 ANKRD49Q8WVL7 239 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 THAP4Q8WY91 577 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 ALKBH8Q96BT7 664 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms