RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ENTPD3O75355 529 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 GFPT2O94808 682 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 TOMM70O94826 608 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 HPP00738 406 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 IGHV2-70P01814 119 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 HAPLN1P10915 354 aaPredicted RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 TRIM21P19474 475 aaKnown RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 DNASE1P24855 282 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 PTPN3P26045 913 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 ACTN2P35609 894 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 CETN2P41208 172 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 DNA2P51530 1060 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 KRTAP12-2P59991 146 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 CSNK2BP67870 215 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 MAT1AQ00266 395 aaKnown RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 DHODHQ02127 395 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 ZFP36L1Q07352 338 aaKnown RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 UGT3A2Q3SY77 523 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 MCMDC2Q4G0Z9 681 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 FGD3Q5JSP0 725 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 TMEM211Q6ICI0 200 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 GDPGP1Q6ZNW5 385 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 KCNMB4Q86W47 210 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 FAM131BQ86XD5 332 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 KLHDC1Q8N7A1 406 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 METTL21AQ8WXB1 218 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 FAM20AQ96MK3 541 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 ATF6BQ99941 703 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 TREX2Q9BQ50 279 aaPredicted RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 MXD3Q9BW11 206 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 CTSZQ9UBR2 303 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 IL17BQ9UHF5 180 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 ZNF510Q9Y2H8 683 aa2.33□□□□□ -2.04
VPS35-207ENST00000568191 WBP11Q9Y2W2 641 aaKnown RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 RSF1Q96T23 1441 aaPredicted RBP2.33□□□□□ -2.04
VPS35-207ENST00000568191 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 NEMP2A6NFY4 417 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 A8MV72 311 aaPredicted RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 SNURFLB1AK76 121 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 DANCRP0C864 163 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 GP1BBP13224 206 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 GP9P14770 177 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 PORP16435 677 aaPredicted RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 AADACP22760 399 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 HNRNPKP61978 463 aaKnown RBP eCLIP2.32□□□□□ -2.04
VPS35-207ENST00000568191 IRX4P78413 519 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 EPS8Q12929 822 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 TRAP1Q12931 704 aaKnown RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 ZNF177Q13360 481 aaPredicted RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 TRIM29Q14134 588 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 MTF1Q14872 753 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 CBWD6Q4V339 395 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 RILPL1Q5EBL4 403 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 CBWD3Q5JTY5 395 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 RSBN1Q5VWQ0 802 aaPredicted RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 ITPRIPL1Q6GPH6 555 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 LEKR1Q6ZMV7 388 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 ADGRA1Q86SQ6 560 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 TMPRSS11BQ86T26 416 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 CATSPERDQ86XM0 798 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 RNF130Q86XS8 419 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 MMD2Q8IY49 270 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 ZNF595Q8IYB9 648 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 OR4K1Q8NGD4 311 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 RSRC1Q96IZ7 334 aaKnown RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 CYYR1Q96J86 154 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 ABHD1Q96SE0 405 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 TLE6Q9H808 572 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 SLC24A2Q9UI40 661 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 CPSF3Q9UKF6 684 aaKnown RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 ABT1Q9ULW3 272 aaKnown RBP2.32□□□□□ -2.04
VPS35-207ENST00000568191 GPR34Q9UPC5 381 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 TMED3Q9Y3Q3 217 aa2.32□□□□□ -2.04
VPS35-207ENST00000568191 ATRXP46100 2492 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 IGHV4-30-2A0A087WSY4 118 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 LOC102723996A0A087X1L8 192 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 TMEM221A6NGB7 291 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 SLC1A7O00341 560 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 TRAFD1O14545 582 aaPredicted RBP2.31□□□□□ -2.04
VPS35-207ENST00000568191 OGTO15294 1046 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PGM3O95394 542 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 HOXD4P09016 255 aaPredicted RBP2.31□□□□□ -2.04
VPS35-207ENST00000568191 LINGO3P0C6S8 592 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 CSH1P0DML2 217 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 CSH2P0DML3 217 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 IL4RP24394 825 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 SOX3P41225 446 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 VAMP7P51809 220 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 CDH13P55290 713 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 ERVK-16P61578 105 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 TMEM132DQ14C87 1099 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PCLAFQ15004 111 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 WTAPQ15007 396 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 FAM189A2Q15884 450 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 OR4A47Q6IF82 309 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 KRTAP5-2Q701N4 177 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 CATSPER3Q86XQ3 398 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 OR4N5Q8IXE1 308 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PHC2Q8IXK0 858 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 ZBED8Q8IZ13 594 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms