RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.92■□□□□ 0.3
HDDC3-205ENST00000559898 SMPDL3AQ92484 453 aa16.92■□□□□ 0.3
HDDC3-205ENST00000559898 FKBP10Q96AY3 582 aa16.92■□□□□ 0.3
HDDC3-205ENST00000559898 C8orf44Q96CB5 159 aa16.92■□□□□ 0.3
HDDC3-205ENST00000559898 ANKMY1Q9P2S6 941 aa16.92■□□□□ 0.3
HDDC3-205ENST00000559898 CDC23Q9UJX2 597 aa16.92■□□□□ 0.3
HDDC3-205ENST00000559898 RUVBL1Q9Y265 456 aaKnown RBP16.92■□□□□ 0.3
HDDC3-205ENST00000559898 SCN3AQ9NY46 2000 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 AGPSO00116 658 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 CATP04040 527 aaKnown RBP16.91■□□□□ 0.3
HDDC3-205ENST00000559898 MPC1LP0DKB6 136 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 MMP11P24347 488 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 IMPA1P29218 277 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 RPA3P35244 121 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-205ENST00000559898 MRPL49Q13405 166 aaKnown RBP16.91■□□□□ 0.3
HDDC3-205ENST00000559898 SYT16Q17RD7 645 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 ZXDCQ2QGD7 858 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-205ENST00000559898 HIST2H2BCQ6DN03 193 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 KLHL7Q8IXQ5 586 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 PARP9Q8IXQ6 854 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 C2CD4AQ8NCU7 369 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-205ENST00000559898 MAGEC3Q8TD91 643 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 EEF1AKMT1Q8WVE0 214 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 KCNJ9Q92806 393 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 ZFYVE21Q9BQ24 234 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 MACROD1Q9BQ69 325 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 C17orf62Q9BQA9 187 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 TRIM51Q9BSJ1 452 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 SLC26A1Q9H2B4 701 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 ASIC3Q9UHC3 531 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 IKZF3Q9UKT9 509 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 PYCARDQ9ULZ3 195 aa16.91■□□□□ 0.3
HDDC3-205ENST00000559898 SMAPO00193 183 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 PEX12O00623 359 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 PFDN6O15212 129 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 SRPX2O60687 465 aaPredicted RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 DPM1O60762 260 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 FKBP9O95302 570 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 AHSGP02765 367 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 SKIV2L2P42285 1042 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 CARSP49589 748 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 MRPS25P82663 173 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 KLC1Q07866 573 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 MYBPC3Q14896 1274 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 BBS9Q3SYG4 887 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 VWA5B1Q5TIE3 1220 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 TRMT10BQ6PF06 316 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 NEK10Q6ZWH5 1172 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 UBE2R2Q712K3 238 aaPredicted RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 RAB42Q8N4Z0 105 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 STT3BQ8TCJ2 826 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 GRK7Q8WTQ7 553 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 COL26A1Q96A83 441 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 FER1L6-AS2Q96M78 137 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 OR2A5Q96R48 311 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 NAP1L3Q99457 506 aaPredicted RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 EBNA1BP2Q99848 306 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 WDR54Q9H977 334 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 ZNF304Q9HCX3 659 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 PCYOX1Q9UHG3 505 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 NTNG1Q9Y2I2 539 aa16.9■□□□□ 0.3
HDDC3-205ENST00000559898 PRRC2CQ9Y520 2896 aaKnown RBP16.9■□□□□ 0.3
HDDC3-205ENST00000559898 USP9XQ93008 2570 aaPredicted RBP16.89■□□□□ 0.3
HDDC3-205ENST00000559898 TCP11X1B4DZS4 312 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 TP73O15350 636 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 FOXS1O43638 330 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 ALBP02768 609 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 CELA2AP08217 269 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PGAM1P18669 254 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PRDX1Q06830 199 aaKnown RBP16.89■□□□□ 0.29
HDDC3-205ENST00000559898 HIF1AQ16665 826 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 ARMC3Q5W041 872 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PAQR3Q6TCH7 311 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PRSS41Q7RTY9 318 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 CREG2Q8IUH2 290 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 AMER3Q8N944 861 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 CLEC1AQ8NC01 280 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 FBXO15Q8NCQ5 510 aaPredicted RBP16.89■□□□□ 0.29
HDDC3-205ENST00000559898 OR11G2Q8NGC1 345 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 CABS1Q96KC9 395 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 FAM114A2Q9NRY5 505 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PDE10AQ9Y233 779 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 VPS9D1Q9Y2B5 631 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 PCDHGB7Q9Y5F8 929 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 MRFAP1Q9Y605 127 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 NBPF19A0A087WUL8 3843 aa16.89■□□□□ 0.29
HDDC3-205ENST00000559898 H7BY64 318 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CES2O00748 559 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ZSCAN12O43309 604 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 SEMA7AO75326 666 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ZGLP1P0C6A0 271 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ITGA3P26006 1051 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ELK3P41970 407 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 MAT1AQ00266 395 aaKnown RBP16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ARHGAP19Q14CB8 494 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 PHKG1Q16816 387 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 FAM214AQ32MH5 1076 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 TTLL9Q3SXZ7 439 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 YOD1Q5VVQ6 348 aaPredicted RBP16.88■□□□□ 0.29
HDDC3-205ENST00000559898 PRAMEF13Q5VWM6 474 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms