RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ABCB1P08183 1280 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 UMPSP11172 480 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 LAMP1P11279 417 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 COX7A2P14406 83 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 ZNF8P17098 575 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 PTPN6P29350 595 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 KIR3DL1P43629 444 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 UGT8Q16880 541 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.28□□□□□ -0.76
CUX1-217ENST00000558836 GGTA1PQ4G0N0 100 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 CYBRD1Q53TN4 286 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 TTC33Q6PID6 262 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 SLC30A9Q6PML9 568 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 APLFQ8IW19 511 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 PAPD5Q8NDF8 572 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 WDR20Q8TBZ3 569 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 COQ10AQ96MF6 247 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 BDH2Q9BUT1 245 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 MRPS26Q9BYN8 205 aaKnown RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 MUC13Q9H3R2 512 aa10.28□□□□□ -0.76
CUX1-217ENST00000558836 SMPD3Q9NY59 655 aaPredicted RBP10.28□□□□□ -0.76
CUX1-217ENST00000558836 A0A0C4DFX4 3053 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 HOXC11O43248 304 aaPredicted RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 DIRAS1O95057 198 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 C1orf105O95561 183 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 CST1P01037 141 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 NTRK1P04629 796 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 RAP2AP10114 183 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 FCGR1AP12314 374 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 RPS13P62277 151 aaKnown RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 TBPL1P62380 186 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 ACSM2AQ08AH3 577 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 APOFQ13790 326 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 SPIDRQ14159 915 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 PON2Q15165 354 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 RBBP5Q15291 538 aaKnown RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 SLC36A3Q495N2 470 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 LRRC23Q53EV4 343 aaPredicted RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 CDKL4Q5MAI5 379 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 ACSM2BQ68CK6 577 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 C2orf16Q68DN1 1984 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 FAM83HQ6ZRV2 1179 aaPredicted RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 ZNF740Q8NDX6 193 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 OR7G3Q8NG95 312 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 OR8D1Q8WZ84 308 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 KLK6Q92876 244 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 SH3KBP1Q96B97 665 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 SLC47A1Q96FL8 570 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 CCDC138Q96M89 665 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 FOPNLQ96NB1 174 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 LGR4Q9BXB1 951 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 TRIM4Q9C037 500 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 SPNS1Q9H2V7 528 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 LIN28AQ9H9Z2 209 aaKnown RBP10.27□□□□□ -0.76
CUX1-217ENST00000558836 PNPLA3Q9NST1 481 aa10.27□□□□□ -0.76
CUX1-217ENST00000558836 TRBV5-3A0A0A0MS03 114 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 GNG14A0A1W2PPG7 69 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 FPGTO14772 594 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 SCAMP1O15126 338 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 CREG1O75629 220 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 POP7O75817 140 aaKnown RBP10.27□□□□□ -0.77
CUX1-217ENST00000558836 ZNF682O95780 498 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 TGFB1P01137 390 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 PRPS2P11908 318 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 UBE3AQ05086 875 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 SPATS1Q496A3 300 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 CES5AQ6NT32 575 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 ZCCHC8Q6NZY4 707 aaKnown RBP10.27□□□□□ -0.77
CUX1-217ENST00000558836 MICU2Q8IYU8 434 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 DHRSXQ8N5I4 330 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 MFSD2AQ8NA29 543 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 SMARCD2Q92925 531 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 ITFG2Q969R8 447 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 ITCHQ96J02 903 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 LRIG1Q96JA1 1093 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 VPS35Q96QK1 796 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 KCNH6Q9H252 994 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 DDX18Q9NVP1 670 aaKnown RBP10.27□□□□□ -0.77
CUX1-217ENST00000558836 TMEM45AQ9NWC5 275 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 THG1LQ9NWX6 298 aaKnown RBP10.27□□□□□ -0.77
CUX1-217ENST00000558836 HCN2Q9UL51 889 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 SLC27A6Q9Y2P4 619 aa10.27□□□□□ -0.77
CUX1-217ENST00000558836 TDRKHQ9Y2W6 561 aaKnown RBP10.27□□□□□ -0.77
CUX1-217ENST00000558836 GRXCR2A6NFK2 248 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 LATO43561 262 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 ASLP04424 464 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 FESP07332 822 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 NUDT7P0C024 238 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 VAC14Q08AM6 782 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 CNTN1Q12860 1018 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 COL9A2Q14055 689 aaPredicted RBP10.26□□□□□ -0.77
CUX1-217ENST00000558836 ELAVL3Q14576 367 aaKnown RBP10.26□□□□□ -0.77
CUX1-217ENST00000558836 TCEA2Q15560 299 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 LIPJQ5W064 366 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 TMEM179BQ7Z7N9 219 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 TMEM132CQ8N3T6 1108 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 GOLM1Q8NBJ4 401 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 GLMNQ92990 594 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 CHFRQ96EP1 664 aa10.26□□□□□ -0.77
CUX1-217ENST00000558836 FAM83CQ9BQN1 747 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms