RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SORCS1Q8WY21 1168 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 HIST1H2AHQ96KK5 128 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SAMD11Q96NU1 681 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 HIST1H2AJQ99878 128 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 H2AFJQ9BTM1 129 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SUV39H2Q9H5I1 410 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 TMEM184CQ9NVA4 438 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 PNMA8BQ9ULN7 279 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 SCN8AQ9UQD0 1980 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 FUOMA2VDF0 154 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 CFAP99D6REC4 459 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 E7EQ34 232 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 WNT9AO14904 365 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SLC16A6O15403 523 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 RECQL5O94762 991 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 SLC6A12P48065 614 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 PREPP48147 710 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 EPHB3P54753 998 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 NCS1P62166 190 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 IFITM3Q01628 133 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SHQ1Q6PI26 577 aaKnown RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 Q6ZVL8 140 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 LZICQ8WZA0 190 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 SH3YL1Q96HL8 342 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 HSH2DQ96JZ2 352 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 RMND5AQ9H871 391 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 HMX1Q9NP08 348 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 IL1RAPQ9NPH3 570 aa12.49□□□□□ -0.41
LDLR-207ENST00000558013 KIAA1522Q9P206 1035 aaPredicted RBP12.49□□□□□ -0.41
LDLR-207ENST00000558013 ZNF99A8MXY4 864 aaPredicted RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 TEX28O15482 410 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 HOXA2O43364 376 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 SOCS5O75159 536 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MT-ND2P03891 347 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MAGEA2P43356 314 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 TMEM25Q86YD3 366 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 HIPK1Q86Z02 1210 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ZZZ3Q8IYH5 903 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 GPR156Q8NFN8 814 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MED8Q96G25 268 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 TSEN34Q9BSV6 310 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 TRIT1Q9H3H1 467 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 SAMHD1Q9Y3Z3 626 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 ORC6Q9Y5N6 252 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 PMF1-BGLAPU3KQ54 211 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ZBBXA8MT70 800 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 SULT1C4O75897 302 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ABCB1P08183 1280 aaPredicted RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 COX7A2P14406 83 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 PSMB9P28065 219 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 KDELR2P33947 212 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 IRF8Q02556 426 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MVKQ03426 396 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 VMACQ2NL98 169 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 XKR6Q5GH73 641 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 SLCO6A1Q86UG4 719 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 OR52E4Q8NGH9 312 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ELMO1Q92556 727 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 TESCQ96BS2 214 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 CMTM7Q96FZ5 175 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 TMEM169Q96HH4 297 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MAGIXQ9H6Y5 334 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 BLOC1S6Q9UL45 172 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 SH3BP1Q9Y3L3 701 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 UGT2B11O75310 529 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 CCNDBP1O95273 360 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 OPN1SWP03999 348 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 LCKP06239 509 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 OR56A5P0C7T3 313 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ETV3P41162 512 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 SPINT3P49223 89 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 SMU1Q2TAY7 513 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 FAM180BQ6P0A1 224 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 HSD11B1LQ7Z5J1 315 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 CBARPQ8N350 705 aaPredicted RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 TTC29Q8NA56 475 aaPredicted RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 ATG16L2Q8NAA4 619 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 ZNF540Q8NDQ6 660 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 GLMNQ92990 594 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 CEP295NLQ96MC4 621 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 MRPL17Q9NRX2 175 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 TRNAU1APQ9NX07 287 aaKnown RBP12.48□□□□□ -0.41
LDLR-207ENST00000558013 GMPPBQ9Y5P6 360 aa12.48□□□□□ -0.41
LDLR-207ENST00000558013 EVPLLA8MZ36 301 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 SGTAO43765 313 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 OLFM2O95897 454 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 VIPP01282 170 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 PRPS2P11908 318 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 ATP1B2P14415 290 aaPredicted RBP12.47□□□□□ -0.41
LDLR-207ENST00000558013 ITIH1P19827 911 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 RYKP34925 604 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 SLC35A2P78381 396 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 CREMQ03060 361 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 DUOXA1Q1HG43 343 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 LYPLAL1Q5VWZ2 237 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 TPGS2Q68CL5 300 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 KDM4DQ6B0I6 523 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 C22orf39Q6P5X5 142 aa12.47□□□□□ -0.41
LDLR-207ENST00000558013 USP45Q70EL2 814 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms