RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PLXNA4Q9HCM2 1894 aa17.04■□□□□ 0.32
SYNE3-202ENST00000553340 M0R082 166 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 GAPDHSO14556 408 aaPredicted RBP17.03■□□□□ 0.32
SYNE3-202ENST00000553340 FPGTO14772 594 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 EPN2O95208 641 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 GADD45AP24522 165 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 NEK2P51955 445 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 ABRQ12979 859 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 MRPL58Q14197 206 aaKnown RBP17.03■□□□□ 0.32
SYNE3-202ENST00000553340 INO80DQ53TQ3 878 aaPredicted RBP17.03■□□□□ 0.32
SYNE3-202ENST00000553340 C16orf59Q7L2K0 433 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 CMTM7Q96FZ5 175 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 EGLN2Q96KS0 407 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 SIAEQ9HAT2 523 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 MOV10Q9HCE1 1003 aaKnown RBP17.03■□□□□ 0.32
SYNE3-202ENST00000553340 LHX3Q9UBR4 397 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 PCDHGA6Q9Y5G7 932 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 A8MU76 341 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 GPX2P18283 190 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 PRPH2P23942 346 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 C21orf33P30042 268 aaPredicted RBP17.03■□□□□ 0.32
SYNE3-202ENST00000553340 RHOAP61586 193 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 SF3B4Q15427 424 aaKnown RBP eCLIP17.03■□□□□ 0.322e-7■■□□□ 14.1
SYNE3-202ENST00000553340 LRIT3Q3SXY7 679 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 PRSS36Q5K4E3 855 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 ARMC12Q5T9G4 340 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 C9orf131Q5VYM1 1079 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 HOXD1Q9GZZ0 328 aa17.03■□□□□ 0.32
SYNE3-202ENST00000553340 EOMESO95936 686 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 RPLP0P05388 317 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 EPORP19235 508 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 ACRV1P26436 265 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 DUSP4Q13115 394 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 GPR17Q13304 367 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 KRR1Q13601 381 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 LYPLAL1Q5VWZ2 237 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 RNF19BQ6ZMZ0 732 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 MACC1Q6ZN28 852 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 ZNF621Q6ZSS3 439 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 SLC22A15Q8IZD6 547 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 TRPV1Q8NER1 839 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 KBTBD8Q8NFY9 601 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 APIPQ96GX9 242 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 HHIPQ96QV1 700 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 GABARAPL3Q9BY60 117 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 REXO4Q9GZR2 422 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 ZFYVE1Q9HBF4 777 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 ARL15Q9NXU5 204 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 PSORS1C1Q9UIG5 152 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 CRLS1Q9UJA2 301 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 SLC38A8A6NNN8 435 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 E9PQ18 207 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 SCAMP3O14828 347 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 DYRK3O43781 588 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 C1QCP02747 245 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 RPIAP49247 311 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 PRKCDQ05655 676 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 PDE12Q6L8Q7 609 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 CXorf57Q6NSI4 855 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 GPR153Q6NV75 609 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 PTOV1Q86YD1 416 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 FAM83FQ8NEG4 500 aaPredicted RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 MYO19Q96H55 970 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 TPD52L3Q96J77 140 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 APOLD1Q96LR9 279 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 EPYCQ99645 322 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 NXF2Q9GZY0 626 aaKnown RBP17.02■□□□□ 0.32
SYNE3-202ENST00000553340 PLCXD1Q9NUJ7 323 aa17.02■□□□□ 0.32
SYNE3-202ENST00000553340 VWA8A3KMH1 1905 aa17.02■□□□□ 0.31
SYNE3-202ENST00000553340 MAGEB17A8MXT2 336 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 PSMD11O00231 422 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 GJB5O95377 273 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 KLKB1P03952 638 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 PTPN2P17706 415 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 PRPS1L1P21108 318 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 GTF2E2P29084 291 aaKnown RBP17.01■□□□□ 0.31
SYNE3-202ENST00000553340 RCVRNP35243 200 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 MTAPQ13126 283 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 GGTA1PQ4G0N0 100 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 NEK5Q6P3R8 708 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 TTC23LQ6PF05 361 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 SLC46A3Q7Z3Q1 461 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 PARP16Q8N5Y8 322 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 YME1L1Q96TA2 773 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 HTATIP2Q9BUP3 242 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 CDADC1Q9BWV3 514 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 IL26Q9NPH9 171 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 MN1Q10571 1320 aaPredicted RBP17.01■□□□□ 0.31
SYNE3-202ENST00000553340 DPM1O60762 260 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 NBNO60934 754 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 MED26O95402 600 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 VNN2O95498 520 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 VIPP01282 170 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 CORO1AP31146 461 aaKnown RBP17.01■□□□□ 0.31
SYNE3-202ENST00000553340 ATXN7L2Q5T6C5 722 aaPredicted RBP17.01■□□□□ 0.31
SYNE3-202ENST00000553340 DESI1Q6ICB0 168 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 SAPCD2Q86UD0 394 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 SYTL1Q8IYJ3 562 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 PIH1D2Q8WWB5 315 aa17.01■□□□□ 0.31
SYNE3-202ENST00000553340 CEP44Q9C0F1 390 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms