RNA–Protein interactions for RNA: ENST00000549815.1

GCN1-206, Transcript of GCN1, eIF2 alpha kinase activator homolog, human

TSL 3

Gene GCN1, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GCN1-206	ENST00000549815	CTAGE9	A4FU28	777 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	GFY	I3L273	518 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PGRMC1	O00264	195 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PHF2	O75151	1096 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	IPO13	O94829	963 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	SLC16A8	O95907	504 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	CAT	P04040	527 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	ALPP	P05187	535 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	MPP1	Q00013	466 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	TIAL1	Q01085	375 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PRDX1	Q06830	199 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	MRPL49	Q13405	166 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	THOC5	Q13769	683 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	TTLL9	Q3SXZ7	439 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	RNASEH2B	Q5TBB1	312 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	FHL5	Q5TD97	284 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PRAMEF13	Q5VWM6	474 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	ICE2	Q659A1	982 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PRMT9	Q6P2P2	845 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	SLC35F6	Q8N357	371 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	PPFIBP2	Q8ND30	876 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	STT3B	Q8TCJ2	826 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	CD200R1	Q8TD46	325 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	OR2A5	Q96R48	311 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	OSBPL9	Q96SU4	736 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	MRPS30	Q9NP92	439 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	SEMA3G	Q9NS98	782 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	TAC3	Q9UHF0	121 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	RUVBL1	Q9Y265	456 aa	Known RBP	12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	CSAG2	Q9Y5P2	127 aa		12.81	□□□□□ -0.36
GCN1-206	ENST00000549815	SPTBN1	Q01082	2364 aa	Known RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	NRDC	O43847	1150 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	SEMA7A	O75326	666 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	HAUS5	O94927	633 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	EIF2S1	P05198	315 aa	Known RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	ZGLP1	P0C6A0	271 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	RNF224	P0DH78	156 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	ENO3	P13929	434 aa	Predicted RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	ITGA3	P26006	1051 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	VARS	P26640	1264 aa	Known RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	RPA3	P35244	121 aa	Predicted RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	HSD17B2	P37059	387 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	SKIV2L2	P42285	1042 aa	Known RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	FNTA	P49354	379 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	RELA	Q04206	551 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	KLC1	Q07866	573 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815		Q0VFX4	171 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	LONRF1	Q17RB8	773 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	MUM1	Q2TAK8	710 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	HKDC1	Q2TB90	917 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	CUZD1	Q86UP6	607 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	IQCK	Q8N0W5	287 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	OR11G2	Q8NGC1	345 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	NAP1L3	Q99457	506 aa	Predicted RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	GPR21	Q99679	349 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	BARD1	Q99728	777 aa	Known RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	C20orf96	Q9NUD7	363 aa	Predicted RBP	12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	ASF1B	Q9NVP2	202 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	FBXO5	Q9UKT4	447 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815	PCDHGA10	Q9Y5H3	936 aa		12.8	□□□□□ -0.36
GCN1-206	ENST00000549815		A0A1W2PQ72	361 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	ZNF839	A8K0R7	811 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	EIF3F	O00303	357 aa	Predicted RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	FOXS1	O43638	330 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	IMPA1	P29218	277 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CARS	P49589	748 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	SNRPN	P63162	240 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	ABAT	P80404	500 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	RBBP7	Q16576	425 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	EIF2S3L	Q2VIR3	472 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	TUBB8	Q3ZCM7	444 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	HSP90AA5P	Q58FG0	334 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	VWA2	Q5GFL6	755 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	ATG9B	Q674R7	924 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	PIWIL4	Q7Z3Z4	852 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	LAPTM4B	Q86VI4	370 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	PPIL6	Q8IXY8	311 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CPNE9	Q8IYJ1	553 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	ZADH2	Q8N4Q0	377 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CISD2	Q8N5K1	135 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CSNK1A1L	Q8N752	337 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	PPP4R1	Q8TF05	950 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	TM9SF4	Q92544	642 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	MIEF2	Q96C03	454 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	MVB12A	Q96EY5	273 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	AARSD1	Q9BTE6	412 aa	Known RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CRB3	Q9BUF7	120 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	SLC29A3	Q9BZD2	475 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	CUEDC1	Q9NWM3	386 aa	Predicted RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	ZNF282	Q9UDV7	671 aa	Predicted RBP	12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	NTNG1	Q9Y2I2	539 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	MAD1L1	Q9Y6D9	718 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	COMMD10	Q9Y6G5	202 aa		12.79	□□□□□ -0.36
GCN1-206	ENST00000549815	SMAP	O00193	183 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	CES2	O00748	559 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	P2RX6	O15547	441 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	VPS26A	O75436	327 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	AGFG2	O95081	481 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	CCNDBP1	O95273	360 aa		12.78	□□□□□ -0.36
GCN1-206	ENST00000549815	CBX6	O95503	412 aa		12.78	□□□□□ -0.36

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