RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 GFYI3L273 518 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 FFAR3O14843 346 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 GPR42O15529 346 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 IPO13O94829 963 aaKnown RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 HAUS5O94927 633 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 CBX6O95503 412 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 CATP04040 527 aaKnown RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ZGLP1P0C6A0 271 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 PNLIPRP1P54315 467 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 TIAL1Q01085 375 aaKnown RBP eCLIP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 TAP2Q03519 686 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 TSTA3Q13630 321 aaPredicted RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ARHGAP19Q14CB8 494 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 NR6A1Q15406 480 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 HIF1AQ16665 826 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 HKDC1Q2TB90 917 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ICE2Q659A1 982 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ZNF425Q6IV72 752 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 PRMT9Q6P2P2 845 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 NEK10Q6ZWH5 1172 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 IQCKQ8N0W5 287 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ZADH2Q8N4Q0 377 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ARHGEF39Q8N4T4 335 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 AMER2Q8N7J2 671 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 PRR7Q8TB68 274 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 C8orf44Q96CB5 159 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 BARD1Q99728 777 aaKnown RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 ILKAPQ9H0C8 392 aaPredicted RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 FAM114A2Q9NRY5 505 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 SEMA3GQ9NS98 782 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 C20orf96Q9NUD7 363 aaPredicted RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 KLHL42Q9P2K6 505 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 NXT1Q9UKK6 140 aaKnown RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 VPS9D1Q9Y2B5 631 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 DHRS7Q9Y394 339 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 MAD1L1Q9Y6D9 718 aa12.72□□□□□ -0.37
CPSF6-204ENST00000547486 UTP20O75691 2785 aaKnown RBP12.72□□□□□ -0.37
CPSF6-204ENST00000547486 USP9YO00507 2555 aaPredicted RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 PRRC2CQ9Y520 2896 aaKnown RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 IGLV3-12A0A075B6K2 115 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 VARSP26640 1264 aaKnown RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 HSD17B2P37059 387 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 GLRBP48167 497 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 MPP1Q00013 466 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 RBBP7Q16576 425 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 LONRF1Q17RB8 773 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 MUM1Q2TAK8 710 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 HSP90AA5PQ58FG0 334 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 ATG9BQ674R7 924 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 IGFL2Q6UWQ7 119 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 SHISA5Q8N114 240 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 CSNK1A1LQ8N752 337 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 FBXO15Q8NCQ5 510 aaPredicted RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 CD200R1Q8TD46 325 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 TM9SF4Q92544 642 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 KCNJ9Q92806 393 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 MIEF2Q96C03 454 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 THOC3Q96J01 351 aaKnown RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 GPR21Q99679 349 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 CRB3Q9BUF7 120 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 ABCF3Q9NUQ8 709 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 ZNF282Q9UDV7 671 aaPredicted RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 FBXO5Q9UKT4 447 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 RUVBL1Q9Y265 456 aaKnown RBP12.71□□□□□ -0.37
CPSF6-204ENST00000547486 PCDHGA10Q9Y5H3 936 aa12.71□□□□□ -0.37
CPSF6-204ENST00000547486 PGRMC1O00264 195 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 FOXS1O43638 330 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 KLHL41O60662 606 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 PHF2O75151 1096 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 KLHL18O94889 574 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 SYF2O95926 243 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 MPC1LP0DKB6 136 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 ERVK-10P10266 1014 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 FBLP22087 321 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 GABRB3P28472 473 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 SLC26A3P40879 764 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 SKIV2L2P42285 1042 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 EMP3P54852 163 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 OCA2Q04671 838 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 TTLL9Q3SXZ7 439 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 TUBB8Q3ZCM7 444 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 RNASEH2BQ5TBB1 312 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 AGAP7PQ5VUJ5 663 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 PIWIL4Q7Z3Z4 852 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 PLD3Q8IV08 490 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 CPNE9Q8IYJ1 553 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 SLC35F6Q8N357 371 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 AMER3Q8N944 861 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 ACTRT1Q8TDG2 376 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 SSC4DQ8WTU2 575 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 CABS1Q96KC9 395 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 AGAP4Q96P64 663 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 OSBPL9Q96SU4 736 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 AARSD1Q9BTE6 412 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 LHPPQ9H008 270 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 ZNF160Q9HCG1 818 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 IARS2Q9NSE4 1012 aaKnown RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 CUEDC1Q9NWM3 386 aaPredicted RBP12.7□□□□□ -0.38
CPSF6-204ENST00000547486 C3orf18Q9UK00 162 aa12.7□□□□□ -0.38
CPSF6-204ENST00000547486 ADAMTS6Q9UKP5 1117 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms