RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 DMRTA2Q96SC8 542 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 HES7Q9BYE0 225 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 KLHL1Q9NR64 748 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 C14orf105Q9NVL8 296 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 FEZ2Q9UHY8 353 aaPredicted RBP12.09□□□□□ -0.47
SCAF11-208ENST00000546534 TEKT2Q9UIF3 430 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 SLC39A10Q9ULF5 831 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 NPIPA1Q9UND3 350 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 KLK4Q9Y5K2 254 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 ANKHD1Q8IWZ3 2542 aaKnown RBP12.09□□□□□ -0.47
SCAF11-208ENST00000546534 E9PLN8 166 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 APOC4-APOC2K7ER74 178 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 ADAM10O14672 748 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 ASNA1O43681 348 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 AKR1B10O60218 316 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 GPC4O75487 556 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 MLYCDO95822 493 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 APOC2P02655 101 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 RPN2P04844 631 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 ERVK-10P10266 1014 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 ABOP16442 354 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 MSNP26038 577 aaKnown RBP12.08□□□□□ -0.48
SCAF11-208ENST00000546534 FOXN2P32314 431 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 MARCKSL1P49006 195 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 ST13P50502 369 aaKnown RBP12.08□□□□□ -0.48
SCAF11-208ENST00000546534 AP2B1P63010 937 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 POU6F1Q14863 301 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 FCRLBQ6BAA4 426 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 TMEM205Q6UW68 189 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 UNC5DQ6UXZ4 953 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 RNF44Q7L0R7 432 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 DOLPP1Q86YN1 238 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 CHERPQ8IWX8 916 aaKnown RBP12.08□□□□□ -0.48
SCAF11-208ENST00000546534 KATNAL2Q8IYT4 538 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 RCOR2Q8IZ40 523 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 BEST3Q8N1M1 668 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 MDS2Q8NDY4 140 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 PHF10Q8WUB8 498 aaKnown RBP12.08□□□□□ -0.48
SCAF11-208ENST00000546534 CABS1Q96KC9 395 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 SIGLEC12Q96PQ1 595 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 VKORC1Q9BQB6 163 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 TUBB6Q9BUF5 446 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 TGIF2Q9GZN2 237 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 GOLPH3Q9H4A6 298 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 SPTLC3Q9NUV7 552 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 CDC14AQ9UNH5 594 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 PCDHGB6Q9Y5F9 930 aa12.08□□□□□ -0.48
SCAF11-208ENST00000546534 CCDC162PA2VCL2 907 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 KRT87PA6NCN2 255 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ASPDHA6ND91 283 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 PRPF4O43172 522 aaKnown RBP eCLIP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 PSMA3P25788 255 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 SLC26A3P40879 764 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 YBX1P67809 324 aaKnown RBP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 HSF1Q00613 529 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 TUBA3CQ13748 450 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 SYT16Q17RD7 645 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ACER2Q5QJU3 275 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 FBXO42Q6P3S6 717 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 TUBA3EQ6PEY2 450 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 SIAH3Q8IW03 269 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 KLHDC8BQ8IXV7 354 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 OR2L3Q8NG85 312 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 OR2A1Q8NGT9 310 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 LKAAEAR1Q8TD35 194 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ASZ1Q8WWH4 475 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 MMABQ96EY8 250 aaPredicted RBP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ZNF354BQ96LW1 612 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 SPATA13Q96N96 652 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 FRMD6Q96NE9 622 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ZFYVE21Q9BQ24 234 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 FERMT1Q9BQL6 677 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 TRIM51Q9BSJ1 452 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ANP32EQ9BTT0 268 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 MKKSQ9NPJ1 570 aaPredicted RBP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 PIH1D1Q9NWS0 290 aaKnown RBP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ANKRD10Q9NXR5 420 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 TNFRSF10DQ9UBN6 386 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 MKL2Q9ULH7 1088 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 PPT2Q9UMR5 302 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.07□□□□□ -0.48
SCAF11-208ENST00000546534 ALG6Q9Y672 507 aa12.07□□□□□ -0.48
SCAF11-208ENST00000546534 NIPBLQ6KC79 2804 aaeCLIP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 IGHV3-20A0A0C4DH32 117 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 A0A1W2PPV9 198 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 FAM221AA4D161 298 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 OR2A25A4D2G3 310 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 MROH6A6NGR9 719 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 IQCF5A8MTL0 148 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 H0YGG7 62 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 STK10O94804 968 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 SEC24DO94855 1032 aaPredicted RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 RBP3P10745 1247 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 IGFBP2P18065 325 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 EEF1DP29692 281 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 CD96P40200 585 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 EIF3EP60228 445 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 ARF3P61204 181 aaPredicted RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 TCEAL1Q15170 157 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 CCSMST1Q4G0I0 132 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms