RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SACM1LQ9NTJ5 587 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 SYBUQ9NX95 663 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 TMPRSS11EQ9UL52 423 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 RIMKLBQ9ULI2 386 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 CLCA2Q9UQC9 943 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 SF3B6Q9Y3B4 125 aaKnown RBP5□□□□□ -1.61
CLIP1-217ENST00000543205 TCAF1Q9Y4C2 921 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 MAD1L1Q9Y6D9 718 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 DYNC1LI1Q9Y6G9 523 aaKnown RBP5□□□□□ -1.61
CLIP1-217ENST00000543205 SLC30A1Q9Y6M5 507 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 SDK1Q7Z5N4 2213 aa5□□□□□ -1.61
CLIP1-217ENST00000543205 SPAG17Q6Q759 2223 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GTPBP1O00178 669 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CCL22O00626 93 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SCDO00767 359 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A9O60656 530 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SLU7O95391 586 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SOD1P00441 154 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TNFP01375 233 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CSF2P04141 144 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CD3EP07766 207 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CD8BP10966 210 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CTSEP14091 401 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PAMP19021 973 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A6P19224 532 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ITGALP20701 1170 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A1P22309 533 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A4P22310 534 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A3P35503 534 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A5P35504 534 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CCT8P50990 548 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 BLKP51451 505 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 HNRNPKP61978 463 aaKnown RBP eCLIP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PRAMEP78395 509 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GUCY2DQ02846 1103 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CAV1Q03135 178 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CACNG1Q06432 222 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 EIF2B5Q13144 721 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 NFATC2Q13469 925 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PUM1Q14671 1186 aaKnown RBP eCLIP4.99□□□□□ -1.615e-6■□□□□ 10.2
CLIP1-217ENST00000543205 ATP13A5Q4VNC0 1218 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF542PQ5EBM4 170 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 LDLRAP1Q5SW96 308 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TPRG1LQ5T0D9 272 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SLC2A7Q6PXP3 512 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SNX20Q7Z614 316 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TRIM74Q86UV6 250 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PHYKPLQ8IUZ5 450 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GALNT4Q8N4A0 578 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 NOA1Q8NC60 698 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PEX13Q92968 403 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GLYATL1Q969I3 302 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 HDAC10Q969S8 669 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TSACCQ96A04 125 aaPredicted RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FAM120BQ96EK7 910 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CDKN2AIPNLQ96HQ2 116 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 C16orf92Q96LL3 132 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TTC25Q96NG3 672 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 DACH2Q96NX9 599 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 VPS35Q96QK1 796 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 KIFC1Q9BW19 673 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 JAM3Q9BX67 310 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ASB8Q9H765 288 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SUDS3Q9H7L9 328 aaPredicted RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CARS2Q9HA77 564 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A7Q9HAW7 530 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A10Q9HAW8 530 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 UGT1A8Q9HAW9 530 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 IL21RQ9HBE5 538 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MRM3Q9HC36 420 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SLC2A6Q9UGQ3 507 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CRLS1Q9UJA2 301 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GPR179Q6PRD1 2367 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ZFHX4Q86UP3 3567 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 DNAH14Q0VDD8 3507 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 USP24Q9UPU5 2620 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 A0A1B0GTQ1 180 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 FAM237BA0A1B0GVD1 139 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 CCDC162PA2VCL2 907 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 TMEM202A6NGA9 273 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 C4orf47A7E2U8 309 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SCGB1D1O95968 90 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GOT2P00505 430 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 SNRNP70P08621 437 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 RALBP11234 206 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MTHFD2P13995 350 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PGAM1P18669 254 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MSH3P20585 1137 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 NMBRP28336 390 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 AKT1P31749 480 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 MAGEA3P43357 314 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 GNPDA1P46926 289 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 HK3P52790 923 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PLTPP55058 493 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 PCBP3P57721 371 aaKnown RBP4.99□□□□□ -1.61
CLIP1-217ENST00000543205 ARHGAP8P85298 464 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 XIAPP98170 497 aa4.99□□□□□ -1.61
CLIP1-217ENST00000543205 IL9RQ01113 521 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms