RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 R3HDM2Q9Y2K5 976 aaKnown RBP16.92■□□□□ 0.3
CLSTN3-214ENST00000542663 AKR1B15C9JRZ8 316 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 H0YGG7 62 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 PSMD3O43242 534 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 ZNF189O75820 626 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 AGAP20933 346 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 SLC26A3P40879 764 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 GRIA1P42261 906 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 KIR3DL1P43629 444 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 EMP3P54852 163 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 ARF3P61204 181 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 CDH17Q12864 832 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 FASTKQ14296 549 aaKnown RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 HKDC1Q2TB90 917 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 TMEM205Q6UW68 189 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 LINC00523Q86TU6 105 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 ARHGEF39Q8N4T4 335 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 IMMP1LQ96LU5 166 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 TMEM121Q9BTD3 319 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 DPH7Q9BTV6 452 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 TGIF2Q9GZN2 237 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 C14orf105Q9NVL8 296 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 MARCH4Q9P2E8 410 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 RIMKLBQ9ULI2 386 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 TTC7AQ9ULT0 858 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 RUVBL1Q9Y265 456 aaKnown RBP16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 ZNF835Q9Y2P0 537 aa16.91■□□□□ 0.3
CLSTN3-214ENST00000542663 HEXBP07686 556 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 UQCRHP07919 91 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 ERVK-10P10266 1014 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 SSTR2P30874 369 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 RBPJQ06330 500 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 SYT16Q17RD7 645 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 FASTKD1Q53R41 847 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 ABHD17BQ5VST6 288 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 TTC23LQ6PF05 361 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 NEK10Q6ZWH5 1172 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 TC2NQ8N9U0 490 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 DNAAF3Q8N9W5 541 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 OR6P1Q8NGX9 317 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 SLC35B2Q8TB61 432 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 MVB12AQ96EY5 273 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 YIPF2Q9BWQ6 316 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 MKKSQ9NPJ1 570 aaPredicted RBP16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 STMN3Q9NZ72 180 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 CDC14AQ9UNH5 594 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 DUSP10Q9Y6W6 482 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 ITPR3Q14573 2671 aa16.9■□□□□ 0.3
CLSTN3-214ENST00000542663 IGKV1-8A0A0C4DH67 115 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 A0A0U1RQJ8 604 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 PRMT5O14744 637 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 FOXS1O43638 330 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 SNRPNP63162 240 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 ZNF33BQ06732 778 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 KLF1Q13351 362 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 TMED2Q15363 201 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 SPNS3Q6ZMD2 512 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 ZC3H7AQ8IWR0 971 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 SUN3Q8TAQ9 357 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 MTFMTQ96DP5 389 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 MMABQ96EY8 250 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 ACAT2Q9BWD1 397 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 P2RY12Q9H244 342 aa16.89■□□□□ 0.29
CLSTN3-214ENST00000542663 PRPF4O43172 522 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 SUN1O94901 812 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 CLDN14O95500 239 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 ERGP11308 486 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 ADRA1DP25100 572 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 CETN2P41208 172 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 CASP6P55212 293 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 PRAMEP78395 509 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 ZNF766Q5HY98 468 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 LRRC8BQ6P9F7 803 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 Q6ZPB1 254 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 NCCRP1Q6ZVX7 275 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 SHISA5Q8N114 240 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 RAB42Q8N4Z0 105 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 PLCD4Q9BRC7 762 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 TUBB6Q9BUF5 446 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 TCAF1Q9Y4C2 921 aa16.88■□□□□ 0.29
CLSTN3-214ENST00000542663 A0A0A6YYC8 382 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 TCRBV7S2A1N4TA0A589 114 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 ERI2A8K979 691 aaKnown RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 I3L1I5 382 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 ESRRAP11474 423 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 ICAM2P13598 275 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 CMPK1P30085 196 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 PPARGP37231 505 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 CCNFP41002 786 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 SMSP52788 366 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 SUSD1Q6UWL2 747 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 PAQR7Q86WK9 346 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 CSNK1A1LQ8N752 337 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 LRRC57Q8N9N7 239 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 ACBD4Q8NC06 268 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 THAP3Q8WTV1 239 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 SKA2Q8WVK7 121 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 C14orf79Q96F83 325 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 GPR137Q96N19 417 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 SIGLEC12Q96PQ1 595 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms