RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CEACAM20Q6UY09 585 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 THOC6Q86W42 341 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 ZNF655Q8N720 491 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 BANPQ8N9N5 519 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 FLVCR1-AS1Q8TAF5 88 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 TAAR9Q96RI9 348 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 PELI2Q9HAT8 420 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 CPSF2Q9P2I0 782 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 SERTAD3Q9UJW9 196 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 IKZF3Q9UKT9 509 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 LOXL2Q9Y4K0 774 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 DSPP15924 2871 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 DMXL2Q8TDJ6 3036 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 WDFY3Q8IZQ1 3526 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 IGHV5-51A0A0C4DH38 117 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 SLC9B1P1A6NJY1 282 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 A8MU76 341 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 K7EPI3 171 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 UBXN8O00124 270 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 WDR47O94967 919 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 MYL2P10916 166 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 MTHFD2P13995 350 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 CD82P27701 267 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PEBP1P30086 187 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 GRIA3P42263 894 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 CCR8P51685 355 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 SLC18A1P54219 525 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 MC2RQ01718 297 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PCDH1Q08174 1060 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 CDC16Q13042 620 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 GPS2Q13227 327 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PFKFB4Q16877 469 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PAGE2BQ5JRK9 111 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 DCAF12Q5T6F0 453 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 B3GNT8Q7Z7M8 397 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 TAX1BP1Q86VP1 789 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 CCDC63Q8NA47 563 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 ABHD11Q8NFV4 315 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 TTLQ8NG68 377 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 ZCCHC14Q8WYQ9 949 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 EXT2Q93063 718 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 UBE2E3Q969T4 207 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PLCD4Q9BRC7 762 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 DPH7Q9BTV6 452 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 DDA1Q9BW61 102 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 NLNQ9BYT8 704 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 UNKQ9C0B0 810 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 TMEM216Q9P0N5 145 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 TMEM9Q9P0T7 183 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 CIDEBQ9UHD4 219 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PLCL2Q9UPR0 1127 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PLLPQ9Y342 182 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PCDHGA3Q9Y5H0 932 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 PCM1Q15154 2024 aa16.85■□□□□ 0.29
CLSTN3-210ENST00000540931 POLR1CO15160 346 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 HYAL3O43820 417 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 UGDHO60701 494 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 DXOO77932 396 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 ZWINTO95229 277 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 HBQ1P09105 142 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 MAGP20916 626 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 KCNC1P48547 511 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 SEPHS1P49903 392 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 RPS15AP62244 130 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 RTP5Q14D33 572 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 HIST2H2ACQ16777 129 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 C10orf62Q5T681 223 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 YOD1Q5VVQ6 348 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 HIST2H2AA3Q6FI13 130 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 MBOAT1Q6ZNC8 495 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 TMPRSS9Q7Z410 1059 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 GPR135Q8IZ08 494 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 C4orf33Q8N1A6 199 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 KRT78Q8N1N4 520 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 C2orf73Q8N5S3 287 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 PPFIBP2Q8ND30 876 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 SLC5A11Q8WWX8 675 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 AIF1LQ9BQI0 150 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 EFCAB11Q9BUY7 163 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 SARGQ9BW04 601 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 ACAT2Q9BWD1 397 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 C1QTNF3Q9BXJ4 246 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 TMBIM4Q9HC24 238 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 ENAMQ9NRM1 1142 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 RARRES3Q9UL19 164 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 SLC22A14Q9Y267 594 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 AP1M2Q9Y6Q5 423 aa16.84■□□□□ 0.29
CLSTN3-210ENST00000540931 OR2A25A4D2G3 310 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 EFCAB7A8K855 629 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 PRPF4O43172 522 aaKnown RBP eCLIP16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 KIF1CO43896 1103 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 CCNT2O60583 730 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 PLIN3O60664 434 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ST6GAL1P15907 406 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 MPSTP25325 297 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 ERVPABLB-1P60509 514 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 HERVK_113P63132 956 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 C16orf72Q14CZ0 275 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 TBCCQ15814 346 aa16.83■□□□□ 0.28
CLSTN3-210ENST00000540931 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms