RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 CMTM6Q9NX76 183 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 ASIC5Q9NY37 505 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 GPRC5BQ9NZH0 403 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 TBC1D29Q9UFV1 150 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 ACSL5Q9ULC5 683 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 USP22Q9UPT9 525 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 KCNE2Q9Y6J6 123 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 MUC3AQ02505 3323 aa11.84□□□□□ -0.51
AP003559.1-201ENST00000540906 PIPSLA2A3N6 862 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 CHURC1-FNTBB4DL54 471 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 NPIPB8E9PQR5 432 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 ACOT8O14734 319 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 AXIN1O15169 862 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 DNAJA2O60884 412 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 HOXC4P09017 264 aaPredicted RBP11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SLC6A2P23975 617 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 HNF4AP41235 474 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 DGKEP52429 567 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 RPS13P62277 151 aaKnown RBP11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 CTBSQ01459 385 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SELPLGQ14242 412 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 ALG11Q2TAA5 492 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SMU1Q2TAY7 513 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 RABL3Q5HYI8 236 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SPANXN4Q5MJ08 99 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 ATG9BQ674R7 924 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 NXPE4Q6UWF7 544 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SFTPA2Q8IWL1 248 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 SLC15A3Q8IY34 581 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 KIAA2013Q8IYS2 634 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 CMTM7Q96FZ5 175 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 FCRL1Q96LA6 429 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 WDR92Q96MX6 357 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 CAMK1GQ96NX5 476 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 ORAI3Q9BRQ5 295 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 GPR174Q9BXC1 333 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 TMEM168Q9H0V1 697 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 TRIT1Q9H3H1 467 aaKnown RBP11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 POLMQ9NP87 494 aaPredicted RBP11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 LTB4R2Q9NPC1 389 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 TAC3Q9UHF0 121 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 EIF3LQ9Y262 564 aaKnown RBP11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 DYRK1BQ9Y463 629 aa11.83□□□□□ -0.51
AP003559.1-201ENST00000540906 FANCMQ8IYD8 2048 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 PDZK1P1A8MUH7 402 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 TRIM38O00635 465 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 LRATO95237 230 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 ME2P23368 584 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 SESN3P58005 492 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 CSTF3Q12996 717 aaKnown RBP11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 NFYCQ13952 458 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 RPE65Q16518 533 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 C6orf10Q5SRN2 563 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 THEMIS2Q5TEJ8 643 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 KIAA0895LQ68EN5 471 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 NOXRED1Q6NXP6 359 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 LCTLQ6UWM7 567 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 DLEU7Q6UYE1 221 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 Q6ZSR6 202 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 NRROSQ86YC3 692 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 TBC1D21Q8IYX1 336 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 DEFB119Q8N690 84 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 GFM2Q969S9 779 aaKnown RBP11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 BIRC7Q96CA5 298 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 LRRC58Q96CX6 371 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 C11orf24Q96F05 449 aaPredicted RBP11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 TMEM74Q96NL1 305 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 WSB2Q9NYS7 404 aaPredicted RBP11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 KLF15Q9UIH9 416 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 ICKQ9UPZ9 632 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 INVSQ9Y283 1065 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 PCDHA9Q9Y5H5 950 aa11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 SNRNP200O75643 2136 aaKnown RBP11.83□□□□□ -0.52
AP003559.1-201ENST00000540906 DNAH14Q0VDD8 3507 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 TRBV23OR9-2A0A075B6M9 112 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 FAM170BA6NMN3 283 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 H3BNX3 289 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 PI15O43692 258 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 KLHL18O94889 574 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 TBX6O95947 436 aaPredicted RBP11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 C1QCP02747 245 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 CELA2BP08218 269 aaPredicted RBP11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 IDSP22304 550 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 PEBP1P30086 187 aaKnown RBP11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 PKLRP30613 574 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 IRX1P78414 480 aaPredicted RBP11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 UAP1L1Q3KQV9 507 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 FAM174BQ3ZCQ3 159 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 ZNF542PQ5EBM4 170 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 COQ5Q5HYK3 327 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 MED27Q6P2C8 311 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 FAM129CQ86XR2 697 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 LAS2Q8IYD9 372 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 PCYOX1LQ8NBM8 494 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 GPR156Q8NFN8 814 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 TSTD1Q8NFU3 115 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 DNAJB14Q8TBM8 379 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 MAGEC3Q8TD91 643 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 TSPEARQ8WU66 669 aa11.82□□□□□ -0.52
AP003559.1-201ENST00000540906 TMEM125Q96AQ2 219 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms