RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GIMAP2Q9UG22 337 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 NDRG3Q9UGV2 375 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 LSM4Q9Y4Z0 139 aaKnown RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 A3GALT2U3KPV4 340 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 CCDC168Q8NDH2 2452 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 MYH1P12882 1939 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 APCP25054 2843 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 IGSF9BQ9UPX0 1349 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 MED13Q9UHV7 2174 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 LCTP09848 1927 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 WDR81Q562E7 1941 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 FAM237AA0A1B0GTK4 181 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 TYW5A2RUC4 315 aaKnown RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 CPED1A4D0V7 1026 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 HNRNPCL2B2RXH8 293 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 K7ENP7 123 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 WNT9BO14905 357 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 HCRTR2O43614 444 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 DKC1O60832 514 aaKnown RBP eCLIP3.72□□□□□ -1.81
CD44-235ENST00000532339 NDUFS3O75489 264 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SERPINF2P08697 491 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 ANOS1P23352 680 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 CALML3P27482 149 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 IL15P40933 162 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 SLC15A1P46059 708 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 TIMM10P62072 90 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 MRPS6P82932 125 aaKnown RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 LRMPQ12912 555 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 DRAP1Q14919 205 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 PCLAFQ15004 111 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 DUOXA1Q1HG43 343 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 HSDL1Q3SXM5 330 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 ESCO2Q56NI9 601 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SGO1Q5FBB7 561 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 ARMC3Q5W041 872 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 FBXL22Q6P050 247 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 GDPD4Q6W3E5 623 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SPNS3Q6ZMD2 512 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 CFAP77Q6ZQR2 320 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SEPT14Q6ZU15 432 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 RABEPKQ7Z6M1 372 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SMIM29Q86T20 159 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 TMEM173Q86WV6 379 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 MAB21L3Q8N8X9 362 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 IL17RCQ8NAC3 791 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 JAKMIP2Q96AA8 810 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SLC22A18Q96BI1 424 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 ZC3HAV1LQ96H79 300 aaKnown RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 PPP1R13BQ96KQ4 1090 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SPATA33Q96N06 139 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 GAD1Q99259 594 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 APOL6Q9BWW8 343 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 MRPL9Q9BYD2 267 aaKnown RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 C8orf33Q9H7E9 229 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 EBF2Q9HAK2 575 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 MAGEE1Q9HCI5 957 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 RANGRFQ9HD47 186 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 BPIFA1Q9NP55 256 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 MCM9Q9NXL9 1143 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 WSB2Q9NYS7 404 aaPredicted RBP3.72□□□□□ -1.81
CD44-235ENST00000532339 PADI1Q9ULC6 663 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 CCPG1Q9ULG6 757 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 ZNF711Q9Y462 761 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 SNX9Q9Y5X1 595 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 FAM169AQ9Y6X4 670 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 CSPG4Q6UVK1 2322 aa3.72□□□□□ -1.81
CD44-235ENST00000532339 A0A1W2PRQ8 180 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 M0QZ92 97 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 UBE2CO00762 179 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 TEX28O15482 410 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 HSPA12AO43301 675 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 XPNPEP2O43895 674 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 ATP2C2O75185 946 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 RGS11O94810 467 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 KDM4BO94953 1096 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 CLDN14O95500 239 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 APBB3O95704 486 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 LGALS2P05162 132 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 ETFAP13804 333 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 SELLP14151 372 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 GDI1P31150 447 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 HOXA13P31271 388 aaPredicted RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 HSD17B4P51659 736 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 CLCN3P51790 818 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 STAT2P52630 851 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 CALD1Q05682 793 aaKnown RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 RBM39Q14498 530 aaKnown RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 RASA2Q15283 850 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 CDONQ4KMG0 1287 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 BMP2KLQ5H9B9 411 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 SPDYCQ5MJ68 293 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 C6orf141Q5SZD1 244 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 GPR139Q6DWJ6 353 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 FAM122CQ6P4D5 195 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 DENND5BQ6ZUT9 1274 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 LPCAT2Q7L5N7 544 aa3.71□□□□□ -1.82
CD44-235ENST00000532339 ZC3HC1Q86WB0 502 aaKnown RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 RALGPS2Q86X27 583 aaPredicted RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 ARID3BQ8IVW6 561 aaPredicted RBP3.71□□□□□ -1.82
CD44-235ENST00000532339 ZCCHC9Q8N567 271 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms