RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RPN2P04844 631 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 NDUFV2P19404 249 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 RPL10P27635 214 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 CLCNKAP51800 687 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 CLNS1AP54105 237 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 PHC1P78364 1004 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 TFF2Q03403 129 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 LIPEQ05469 1076 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 TSTA3Q13630 321 aaPredicted RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 DDX39BQ13838 428 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 ARHGAP19Q14CB8 494 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 PYCR3Q53H96 274 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 GPR153Q6NV75 609 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 NXPE4Q6UWF7 544 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 LAS2Q8IYD9 372 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 TESCQ96BS2 214 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 SCARF2Q96GP6 870 aaPredicted RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 NAF1Q96HR8 494 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 RSRC1Q96IZ7 334 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 TMEM74Q96NL1 305 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 TSSK3Q96PN8 268 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 PRDM6Q9NQX0 595 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 GEMIN8Q9NWZ8 242 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 TDRKHQ9Y2W6 561 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 CFAP20Q9Y6A4 193 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 SLC35G4P0C7Q5 338 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 ATP6V1B2P21281 511 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 SLBPQ14493 270 aaKnown RBP eCLIP19.99■□□□□ 0.79
VPS28-209ENST00000528142 CYP2A13Q16696 494 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 LCTLQ6UWM7 567 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 CYP2R1Q6VVX0 501 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 EGLN2Q96KS0 407 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 PPM1MQ96MI6 270 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 ALG2Q9H553 416 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 PPT2Q9UMR5 302 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 KCNJ13O60928 360 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 KCNH1O95259 989 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 HOXC4P09017 264 aaPredicted RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 ACADMP11310 421 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 PCNAP12004 261 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 ACADSP16219 412 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 ATP6V1C1P21283 382 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 HSD17B2P37059 387 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 MAPKAPK3Q16644 382 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 PRAMEF14Q5SWL7 426 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 C10orf62Q5T681 223 aaPredicted RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 PRAMEF13Q5VWM6 474 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 LPCAT4Q643R3 524 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 KIAA1324Q6UXG2 1013 aaKnown RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 PTRH1Q86Y79 214 aaKnown RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 TBC1D21Q8IYX1 336 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 FAM3CQ92520 227 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 REPS1Q96D71 796 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 OR52E6Q96RD3 313 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 NRTNQ99748 197 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 TRIT1Q9H3H1 467 aaKnown RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 ACTR3BQ9P1U1 418 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 RIMS3Q9UJD0 308 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 MMP17Q9ULZ9 603 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 SUFUQ9UMX1 484 aa19.98■□□□□ 0.79
VPS28-209ENST00000528142 RUVBL1Q9Y265 456 aaKnown RBP19.98■□□□□ 0.79
VPS28-209ENST00000528142 CACNB4O00305 520 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 FOXE1O00358 373 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 RPSAP08865 295 aaKnown RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 ACSL1P33121 698 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 SFSWAPQ12872 951 aaKnown RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 FXNQ16595 210 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 LEXMQ3ZCV2 418 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 PAGE2BQ5JRK9 111 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 LCN8Q6JVE9 175 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 LILRA2Q8N149 483 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 OR8J3Q8NGG0 315 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 OR2T34Q8NGX1 318 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 CHTF18Q8WVB6 975 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 SLCO4A1Q96BD0 722 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 INSM2Q96T92 566 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 ZNF184Q99676 751 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 MYOCQ99972 504 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 EBPLQ9BY08 206 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 MUC13Q9H3R2 512 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 VAPAQ9P0L0 249 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 EGFL7Q9UHF1 273 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 KCNK6Q9Y257 313 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 PLEKHM1Q9Y4G2 1056 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 DOCK9Q9BZ29 2069 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 PIPSLA2A3N6 862 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 LATO43561 262 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 STAMBPO95630 424 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 IL9P15248 144 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 GABRG2P18507 467 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 PEX2P28328 305 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 TPMTP51580 245 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 SELPLGQ14242 412 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 OGFRL1Q5TC84 451 aaPredicted RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 DUS1LQ6P1R4 473 aaKnown RBP19.97■□□□□ 0.79
VPS28-209ENST00000528142 TRIM69Q86WT6 500 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 TMEM126BQ8IUX1 230 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 MSRB3Q8IXL7 192 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 MSANTD3Q96H12 275 aa19.97■□□□□ 0.79
VPS28-209ENST00000528142 LRGUKQ96M69 825 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms