RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NDUFS2O75306 463 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 CPNE6O95741 557 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ANGPTL1O95841 491 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 GNRH1P01148 92 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 UMPSP11172 480 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 LAG3P18627 525 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 RCVRNP35243 200 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 DCTP40126 519 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ETV3P41162 512 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 WDR5P61964 334 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ADNP2Q6IQ32 1131 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 Q6ZVL8 140 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ADCK1Q86TW2 530 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 OR7A2PQ8NGA2 310 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 RAB2BQ8WUD1 216 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 FAM120BQ96EK7 910 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 MUC13Q9H3R2 512 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC32A1Q9H598 525 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF229Q9UJW7 825 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 TBX21Q9UL17 535 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 OGDHLQ9ULD0 1010 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 BCKDKO14874 412 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 SULT1C4O75897 302 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 CXCL14O95715 111 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 LCKP06239 509 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC7A9P82251 487 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 CARD16Q5EG05 197 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 CATSPEREQ5SY80 951 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 PAGE2Q7Z2X7 111 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 TRIM46Q7Z4K8 759 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 NECAB2Q7Z6G3 386 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 GOLM1Q8NBJ4 401 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ABHD8Q96I13 439 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 TPD52L3Q96J77 140 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 CLMPQ9H6B4 373 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 TRPS1Q9UHF7 1281 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 PPT2Q9UMR5 302 aa16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF106Q9H2Y7 1883 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-210ENST00000494566 HIDE1A8MVS5 230 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 TNFRSF1BP20333 461 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 MAPK8P45983 427 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 SPINT3P49223 89 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 RPS14P62263 151 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 TMEM215Q68D42 235 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 HSD11B1LQ7Z5J1 315 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 CYP4Z1Q86W10 505 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 USP7Q93009 1102 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 LMLNQ96KR4 655 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 OSBPL10Q9BXB5 764 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 CFHR5Q9BXR6 569 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 RNF167Q9H6Y7 350 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 TRIM64A6NGJ6 449 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 LILRB3O75022 631 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 CPSF4O95639 269 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 NPPAP01160 153 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 AOAHP28039 575 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 NTHL1P78549 312 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 ABRQ12979 859 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 SKIV2LQ15477 1246 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 TEAD2Q15562 447 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 FXNQ16595 210 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 CCSMST1Q4G0I0 132 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 LYPLAL1Q5VWZ2 237 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 AHSA2Q719I0 299 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 CPXM2Q8N436 756 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 KREMEN2Q8NCW0 462 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 FKBP10Q96AY3 582 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 ECHDC3Q96DC8 303 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 ALPK1Q96QP1 1244 aa16.03■□□□□ 0.16
CCDC88B-210ENST00000494566 AGAP14A8MT82 685 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 TTC34A8MYJ7 566 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 PER2O15055 1255 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 CREG1O75629 220 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 FKBP9O95302 570 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 OR56A5P0C7T3 313 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 TMBIM6P55061 237 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 NPTX1Q15818 432 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 OR4F3Q6IEY1 312 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 DOK6Q6PKX4 331 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 FKBP9P1Q75LS8 142 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 CADM3Q8N126 398 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 EID3Q8N140 333 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 CBARPQ8N350 705 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 ARL10Q8N8L6 244 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF540Q8NDQ6 660 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 OR8J3Q8NGG0 315 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 MTERF1Q99551 399 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 DNAJB9Q9UBS3 223 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 SLC25A13Q9UJS0 675 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 EYSQ5T1H1 3165 aa16.02■□□□□ 0.16
CCDC88B-210ENST00000494566 KRT6AP02538 564 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 KRT6BP04259 564 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 SDC1P18827 310 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 MSH3P20585 1137 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 TTKP33981 857 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 PREPP48147 710 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 KRT6CP48668 564 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 CSNK1DP48730 415 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 NUDT6P53370 316 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 CBX2Q14781 532 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms