RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 SLC23A3Q6PIS1 610 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 Q6ZSR9 355 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 TMEM26Q6ZUK4 368 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 ACAD11Q709F0 780 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 TRPM8Q7Z2W7 1104 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 TMPRSS11BQ86T26 416 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 SLC9B2Q86UD5 537 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 C17orf64Q86WR6 236 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 TRIM48Q8IWZ4 208 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 LAS2Q8IYD9 372 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 SLC25A45Q8N413 288 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 FITM2Q8N6M3 262 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 OR2T11Q8NH01 316 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 CEP70Q8NHQ1 597 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 CEP76Q8TAP6 659 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 LCN9Q8WX39 176 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 CCT6BQ92526 530 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 EFCAB11Q9BUY7 163 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 PITHD1Q9GZP4 211 aaPredicted RBP12.2□□□□□ -0.46
VPS52-220ENST00000493674 SPNS1Q9H2V7 528 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 GEMIN8Q9NWZ8 242 aaKnown RBP12.2□□□□□ -0.46
VPS52-220ENST00000493674 SPHK1Q9NYA1 384 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 TAC3Q9UHF0 121 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 RAB23Q9ULC3 237 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 PPT2Q9UMR5 302 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 BTRCQ9Y297 605 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 PCDHB11Q9Y5F2 797 aa12.2□□□□□ -0.46
VPS52-220ENST00000493674 ASCC3Q8N3C0 2202 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 EP300Q09472 2414 aaPredicted RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 TRBV23OR9-2A0A075B6M9 112 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 IGKV1-8A0A0C4DH67 115 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 GOLGA8QA0A0J9YX86 632 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 GOLGA8OA6NCC3 632 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 LILRA5A6NI73 299 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 B4DGG1 531 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 GOLGA8NF8WBI6 632 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 BTN3A3O00478 584 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 EBAG9O00559 213 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 FCHO1O14526 889 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 FFAR3O14843 346 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 YKT6O15498 198 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 GPR42O15529 346 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 KRT6AP02538 564 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 KRT6BP04259 564 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 ANXA6P08133 673 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 CDH1P12830 882 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 VARSP26640 1264 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 KRT6CP48668 564 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 MRPL19P49406 292 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 ARRB1P49407 418 aaPredicted RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 YBX1P67809 324 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 ABATP80404 500 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 REEP5Q00765 189 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 HHEXQ03014 270 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 PRDX1Q06830 199 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 LAPTM5Q13571 262 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 CPSF6Q16630 551 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS52-220ENST00000493674 ZSCAN26Q16670 478 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 SMU1Q2TAY7 513 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 C6orf132Q5T0Z8 1188 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 FRG2Q64ET8 278 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 LAIR1Q6GTX8 287 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 ZNF438Q7Z4V0 828 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 CLNKQ7Z7G1 428 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 MTDHQ86UE4 582 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 ARL14Q8N4G2 192 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 C2orf73Q8N5S3 287 aaPredicted RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 LRRC37BQ96QE4 947 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 FRG2BQ96QU4 278 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 SARGQ9BW04 601 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 NMUR2Q9GZQ4 415 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 SRMSQ9H3Y6 488 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 NT5DC2Q9H857 520 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 AKTIPQ9H8T0 292 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 PFDN4Q9NQP4 134 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 SAR1AQ9NR31 198 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 FARSBQ9NSD9 589 aaKnown RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 CUEDC1Q9NWM3 386 aaPredicted RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 ZNF490Q9ULM2 529 aaPredicted RBP12.19□□□□□ -0.46
VPS52-220ENST00000493674 SNX6Q9UNH7 406 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 KLK4Q9Y5K2 254 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 GPR179Q6PRD1 2367 aa12.19□□□□□ -0.46
VPS52-220ENST00000493674 SCN3AQ9NY46 2000 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 PIPSLA2A3N6 862 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 CAPN14A8MX76 684 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 E9PBE3 544 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 LSM1O15116 133 aaKnown RBP12.18□□□□□ -0.46
VPS52-220ENST00000493674 DFNA5O60443 496 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 KLHL41O60662 606 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 CCDC22O60826 627 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 SDC3O75056 442 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 ULK1O75385 1050 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 CCNDBP1O95273 360 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 FKBP9O95302 570 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 PDYNP01213 254 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 ALDOCP09972 364 aaKnown RBP12.18□□□□□ -0.46
VPS52-220ENST00000493674 LINC00032P0C843 101 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 HSD3B1P14060 373 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 HSD3B2P26439 372 aa12.18□□□□□ -0.46
VPS52-220ENST00000493674 ARL1P40616 181 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms