RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 OGDHLQ9ULD0 1010 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GPSM3Q9Y4H4 160 aa10.47□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RLFQ13129 1914 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRG6 482 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AQP12BA6NM10 295 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STK16O75716 305 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UFM1P61960 85 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AP1S1P61966 158 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ACSM2AQ08AH3 577 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SGCGQ13326 291 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MADCAM1Q13477 382 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GTF2H2Q13888 395 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBRG1Q3YBR2 411 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ACSM2BQ68CK6 577 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GTF2H2CQ6P1K8 395 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TIFABQ6ZNK6 161 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DSG4Q86SJ6 1040 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SYT12Q8IV01 421 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AQP12AQ8IXF9 295 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UTP15Q8TED0 518 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ALPK1Q96QP1 1244 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CPNE5Q9HCH3 593 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZBTB26Q9HCK0 441 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RASSF1Q9NS23 344 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ATPIF1Q9UII2 106 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MYOFQ9NZM1 2061 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RGS10O43665 173 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ATXN1LP0C7T5 689 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CYP2A7P20853 494 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CD72P21854 359 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GDI1P31150 447 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HTR7P34969 479 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GRK3P35626 688 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MTHFRP42898 656 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ARCN1P48444 511 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HTR6P50406 440 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HERVK_113P63132 956 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CD300CQ08708 224 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CLPPQ16740 277 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CARD16Q5EG05 197 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TECRLQ5HYJ1 363 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF57Q68EA5 555 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FAM109BQ6ICB4 259 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF517Q6ZMY9 492 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AMIGO1Q86WK6 493 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KRT73Q86Y46 540 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TRPV3Q8NET8 790 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RELTQ969Z4 430 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ERVK-6Q9BXR3 956 aa10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TRIM45Q9H8W5 580 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 BRCA1P38398 1863 aaKnown RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ARPC4-TTLL3A0A0A6YYG9 625 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 H0YC42 278 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC22A2O15244 555 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PAK4O96013 591 aaPredicted RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CD36P16671 472 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IMPDH1P20839 514 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SOX9P48436 509 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GRIN2CQ14957 1233 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAPKAPK3Q16644 382 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TIMM50Q3ZCQ8 353 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZC3H12BQ5HYM0 836 aaKnown RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM26DQ5JW98 314 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RBM48Q5RL73 367 aaKnown RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GLYATQ6IB77 296 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GALNT5Q7Z7M9 940 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR8H3Q8N146 312 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DCAF4L2Q8NA75 395 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZFP90Q8TF47 636 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 JPH3Q8WXH2 748 aaPredicted RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM120BQ96EK7 910 aaKnown RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RAD9AQ99638 391 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 VN1R3Q9BXE9 311 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BEX2Q9BXY8 128 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FKBP14Q9NWM8 211 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CLDND1Q9NY35 253 aa10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NDRG2Q9UN36 371 aaKnown RBP10.46□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NOBOXO60393 691 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BCAS1O75363 584 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BPIP17213 487 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PTGER3P43115 390 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAGEA6P43360 314 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LEPRP48357 1165 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ATP6V0D1P61421 351 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CHIT1Q13231 466 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 E2F2Q14209 437 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MEP1AQ16819 746 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM174BQ3ZCQ3 159 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TPRG1LQ5T0D9 272 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GDPD4Q6W3E5 623 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RFPL4BQ6ZWI9 263 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CADM2Q8N3J6 435 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR4F6Q8NGB9 312 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RDH11Q8TC12 318 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CXorf40AQ8TE69 158 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OTULINQ96BN8 352 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C3orf30Q96M34 536 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZSWIM3Q96MP5 696 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CHCHD6Q9BRQ6 235 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms