RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MAP10Q9P2G4 905 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 CSAG2Q9Y5P2 127 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 POLEQ07864 2286 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 MAGEB16A2A368 324 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 H0YGG7 62 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 KLHL41O60662 606 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 PHF2O75151 1096 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 EIF2S1P05198 315 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 VARSP26640 1264 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 RPA3P35244 121 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 PNLIPRP1P54315 467 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 ARF3P61204 181 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 KLC1Q07866 573 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 RBBP7Q16576 425 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 ZNF425Q6IV72 752 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 PRMT9Q6P2P2 845 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 Q6ZS92 163 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 CUZD1Q86UP6 607 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 NAT8LQ8N9F0 302 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 FBXO15Q8NCQ5 510 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 PPFIBP2Q8ND30 876 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 STT3BQ8TCJ2 826 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 ASB11Q8WXH4 323 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 TM9SF4Q92544 642 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 SLC29A3Q9BZD2 475 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 ILKAPQ9H0C8 392 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 MRPS30Q9NP92 439 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 ASF1BQ9NVP2 202 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 KLHL42Q9P2K6 505 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 TAC3Q9UHF0 121 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 PCDHGA10Q9Y5H3 936 aa17.92■□□□□ 0.46
CCDC88B-206ENST00000473405 CPAMD8Q8IZJ3 1885 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 IGLV3-12A0A075B6K2 115 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 CTAGE9A4FU28 777 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 E7ENX8 843 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 PGRMC1O00264 195 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ZGLP1P0C6A0 271 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ERVK-10P10266 1014 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 TAP2Q03519 686 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 PRDX1Q06830 199 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 Q0VFX4 171 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 THOC5Q13769 683 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 MUM1Q2TAK8 710 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 HKDC1Q2TB90 917 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 EIF2S3LQ2VIR3 472 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 TTLL9Q3SXZ7 439 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 TUBB8Q3ZCM7 444 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ICE2Q659A1 982 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 IGFL2Q6UWQ7 119 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ZADH2Q8N4Q0 377 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ARHGEF39Q8N4T4 335 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 CISD2Q8N5K1 135 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 CD200R1Q8TD46 325 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 COG1Q8WTW3 980 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 SIGLEC10Q96LC7 697 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 BARD1Q99728 777 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 CRB3Q9BUF7 120 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 LRRC4CQ9HCJ2 640 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 ZNF282Q9UDV7 671 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 RUVBL1Q9Y265 456 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 NTNG1Q9Y2I2 539 aa17.91■□□□□ 0.46
CCDC88B-206ENST00000473405 GFYI3L273 518 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 EZRP15311 586 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 FBLP22087 321 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 HSD17B2P37059 387 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 EMP3P54852 163 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 MPP1Q00013 466 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 TSTA3Q13630 321 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 NR6A1Q15406 480 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 HIF1AQ16665 826 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 LONRF1Q17RB8 773 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 CYHR1Q6ZMK1 362 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 LRRC56Q8IYG6 542 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 PRSS58Q8IYP2 241 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 CSNK1A1LQ8N752 337 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 PPP4R1Q8TF05 950 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 SSC4DQ8WTU2 575 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 MIEF2Q96C03 454 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 CABS1Q96KC9 395 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 OR2A5Q96R48 311 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 GPR21Q99679 349 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 WDR77Q9BQA1 342 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 C20orf96Q9NUD7 363 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 FBXO5Q9UKT4 447 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 DHRS7Q9Y394 339 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 MYO9AB2RTY4 2548 aa17.9■□□□□ 0.46
CCDC88B-206ENST00000473405 SMAPO00193 183 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 NRDCO43847 1150 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 VPS26AO75436 327 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 CBX6O95503 412 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 MPC1LP0DKB6 136 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 ENO3P13929 434 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 SKIV2L2P42285 1042 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 FNTAP49354 379 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 DSG2Q14126 1118 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 VWA2Q5GFL6 755 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 AGAP7PQ5VUJ5 663 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 PIWIL4Q7Z3Z4 852 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 LAPTM4BQ86VI4 370 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 PARP9Q8IXQ6 854 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms