RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SUPT3HO75486 399 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 IPO13O94829 963 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 S100BP04271 92 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 MTHFD2P13995 350 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 HRH2P25021 359 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 CD82P27701 267 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 GGT5P36269 586 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 GDF5P43026 501 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SLC6A12P48065 614 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 DEFB110Q30KQ9 67 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 C18orf21Q32NC0 220 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 TECRLQ5HYJ1 363 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 ZC3H12BQ5HYM0 836 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 FBXO42Q6P3S6 717 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SH2D5Q6ZV89 423 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 LCA5Q86VQ0 697 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 THOC6Q86W42 341 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 PAQR7Q86WK9 346 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 MCATQ8IVS2 390 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 KLHDC8AQ8IYD2 350 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 KDF1Q8NAX2 398 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 OR1L3Q8NH93 324 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SNIP1Q8TAD8 396 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 N4BP2L2Q92802 583 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SCYL1Q96KG9 808 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 PRAP1Q96NZ9 151 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 TMEM79Q9BSE2 394 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 TMEM109Q9BVC6 243 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SPRY4Q9C004 299 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 CNOT10Q9H9A5 744 aaKnown RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 TMEM184CQ9NVA4 438 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 CUEDC1Q9NWM3 386 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-204ENST00000469054 XPR1Q9UBH6 696 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 SERTAD3Q9UJW9 196 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 PILRAQ9UKJ1 303 aa11.47□□□□□ -0.57
VPS13D-204ENST00000469054 A0A0J9YVX5 310 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 FOXO6A8MYZ6 492 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 KLK8O60259 260 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 NRP2O60462 931 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 SRPX2O60687 465 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 STK16O75716 305 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 WDR47O94967 919 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 TIAF1O95411 115 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 HSPA7P48741 367 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ITGA1P56199 1179 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 PCBP4P57723 403 aaKnown RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 RELAQ04206 551 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 FBXO48Q5FWF7 155 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 BEND6Q5SZJ8 279 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 PWWP2BQ6NUJ5 590 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 RNF44Q7L0R7 432 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ADCK2Q7Z695 626 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 PROSER1Q86XN7 944 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 IQCKQ8N0W5 287 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ABHD11Q8NFV4 315 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 HNRNPLLQ8WVV9 542 aaKnown RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ZCCHC14Q8WYQ9 949 aaKnown RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ESAMQ96AP7 390 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 ZFYVE21Q9BQ24 234 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 MRPL57Q9BQC6 102 aaKnown RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 MRPL46Q9H2W6 279 aaKnown RBP11.46□□□□□ -0.57
VPS13D-204ENST00000469054 DCDC2Q9UHG0 476 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 LGALS13Q9UHV8 139 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 SH2B3Q9UQQ2 575 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 DYRK1BQ9Y463 629 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 KCNE2Q9Y6J6 123 aa11.46□□□□□ -0.57
VPS13D-204ENST00000469054 KIF26BQ2KJY2 2108 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 WDFY3Q8IZQ1 3526 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-204ENST00000469054 E7EQ34 232 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 H3BMH7 237 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 STMND1H3BQB6 276 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TAF4O00268 1085 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 SCRG1O75711 98 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 OR2B3O76000 313 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 STK17BO94768 372 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 KIAA0754O94854 1291 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 GSTA1P08263 222 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CDH1P12830 882 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 GFAPP14136 432 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 EZRP15311 586 aaKnown RBP11.45□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF28P17035 718 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CCT5P48643 541 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CSNK1G2P78368 415 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF844Q08AG5 666 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 PFKFB4Q16877 469 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 PRAMEF17Q5VTA0 474 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TLDC1Q6P9B6 456 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 ZFAND4Q86XD8 727 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 DTX1Q86Y01 620 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TMEM126BQ8IUX1 230 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 GPR135Q8IZ08 494 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TMEM151AQ8N4L1 468 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF248Q8NDW4 579 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 MYRIPQ8NFW9 859 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 OR4K1Q8NGD4 311 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 UBTD2Q8WUN7 234 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 SLC5A11Q8WWX8 675 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 NEIL2Q969S2 332 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms