RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PEX12O00623 359 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 TP73O15350 636 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 CCNDBP1O95273 360 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 ARF3P61204 181 aaPredicted RBP18.52■□□□□ 0.56
USP40-207ENST00000450940 CBLBQ13191 982 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 BBS9Q3SYG4 887 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 PRMT9Q6P2P2 845 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 UBE2R2Q712K3 238 aaPredicted RBP18.52■□□□□ 0.56
USP40-207ENST00000450940 PIWIL4Q7Z3Z4 852 aaKnown RBP18.52■□□□□ 0.56
USP40-207ENST00000450940 KLHL7Q8IXQ5 586 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 PDIK1LQ8N165 341 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 CERS2Q96G23 380 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 SYNPO2LQ9H987 977 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 GPR83Q9NYM4 423 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 TAS2R13Q9NYV9 303 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 C5AR2Q9P296 337 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 RNF14Q9UBS8 474 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 TAC3Q9UHF0 121 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 NXT1Q9UKK6 140 aaKnown RBP18.52■□□□□ 0.56
USP40-207ENST00000450940 PYCARDQ9ULZ3 195 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 G3BP2Q9UN86 482 aaKnown RBP18.52■□□□□ 0.56
USP40-207ENST00000450940 TEX264Q9Y6I9 313 aa18.52■□□□□ 0.56
USP40-207ENST00000450940 AGPSO00116 658 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 EZRP15311 586 aaKnown RBP18.51■□□□□ 0.55
USP40-207ENST00000450940 IMPA1P29218 277 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 ELK3P41970 407 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 OR1D4P47884 311 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 FRG1Q14331 258 aaKnown RBP18.51■□□□□ 0.55
USP40-207ENST00000450940 NADK2Q4G0N4 442 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 TEDDM1Q5T9Z0 273 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 STEAP4Q687X5 459 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 PPFIBP2Q8ND30 876 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 EEF1AKMT1Q8WVE0 214 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 C10orf90Q96M02 699 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 OR2A5Q96R48 311 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 NDNQ99608 321 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 WDR83Q9BRX9 315 aaKnown RBP18.51■□□□□ 0.55
USP40-207ENST00000450940 ZNF304Q9HCX3 659 aa18.51■□□□□ 0.55
USP40-207ENST00000450940 UTP6Q9NYH9 597 aaKnown RBP18.51■□□□□ 0.55
USP40-207ENST00000450940 TRMT6Q9UJA5 497 aaKnown RBP18.51■□□□□ 0.55
USP40-207ENST00000450940 SPENQ96T58 3664 aaKnown RBP18.5■□□□□ 0.55
USP40-207ENST00000450940 A6NL46 340 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 FANCGO15287 622 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 DPM1O60762 260 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 SORBS2O94875 1100 aaKnown RBP18.5■□□□□ 0.55
USP40-207ENST00000450940 SEC31AO94979 1220 aaKnown RBP18.5■□□□□ 0.55
USP40-207ENST00000450940 C8GP07360 202 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 CARSP49589 748 aaKnown RBP18.5■□□□□ 0.55
USP40-207ENST00000450940 CDKN2DP55273 166 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 MYBPC3Q14896 1274 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 MUM1Q2TAK8 710 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 RBM20Q5T481 1227 aaKnown RBP18.5■□□□□ 0.55
USP40-207ENST00000450940 PAQR3Q6TCH7 311 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 GALNT16Q8N428 558 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 ARHGEF39Q8N4T4 335 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 DTWD1Q8N5C7 304 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 CLEC1AQ8NC01 280 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 MCOLN3Q8TDD5 553 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 MVB12AQ96EY5 273 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 PWWP2AQ96N64 755 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 CTSFQ9UBX1 484 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 PLAAQ9Y263 795 aa18.5■□□□□ 0.55
USP40-207ENST00000450940 IGLV3-12A0A075B6K2 115 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 CLEC18AA5D8T8 446 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SOCS6O14544 535 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SLC16A5O15375 505 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 TTI1O43156 1089 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 KLHL41O60662 606 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SYF2O95926 243 aaKnown RBP18.49■□□□□ 0.55
USP40-207ENST00000450940 EIF2S1P05198 315 aaKnown RBP18.49■□□□□ 0.55
USP40-207ENST00000450940 HRH2P25021 359 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 PAFAH1B1P43034 410 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 RGS4P49798 205 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 ITGA8P53708 1063 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 MLLT10P55197 1068 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SP140Q13342 867 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 VWA5B1Q5TIE3 1220 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 GARNL3Q5VVW2 1013 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 IGFL3Q6UXB1 125 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 CLEC18BQ6UXF7 455 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 RBMXL3Q8N7X1 1067 aaKnown RBP18.49■□□□□ 0.55
USP40-207ENST00000450940 CLEC18CQ8NCF0 446 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SNF8Q96H20 258 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 CCDC138Q96M89 665 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 TRIM51Q9BSJ1 452 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 PARVBQ9HBI1 364 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 ATP13A2Q9NQ11 1180 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SEMA3GQ9NS98 782 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 STOX2Q9P2F5 926 aaPredicted RBP18.49■□□□□ 0.55
USP40-207ENST00000450940 ADAMTS6Q9UKP5 1117 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 CORO1CQ9ULV4 474 aaPredicted RBP18.49■□□□□ 0.55
USP40-207ENST00000450940 PDE10AQ9Y233 779 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 HS3ST3B1Q9Y662 390 aa18.49■□□□□ 0.55
USP40-207ENST00000450940 SHANK1Q9Y566 2161 aa18.48■□□□□ 0.55
USP40-207ENST00000450940 TXNDC9O14530 226 aa18.48■□□□□ 0.55
USP40-207ENST00000450940 TSPAN12O95859 305 aa18.48■□□□□ 0.55
USP40-207ENST00000450940 ARL4CP56559 192 aa18.48■□□□□ 0.55
USP40-207ENST00000450940 TSTA3Q13630 321 aaPredicted RBP18.48■□□□□ 0.55
USP40-207ENST00000450940 HIF1AQ16665 826 aa18.48■□□□□ 0.55
USP40-207ENST00000450940 JMJD6Q6NYC1 403 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms