RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CDC14AQ9UNH5 594 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 CACNA1BQ00975 2339 aa3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ZFHX2Q9C0A1 2572 aaPredicted RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 ATXN2Q99700 1313 aaKnown RBP3.95□□□□□ -1.78
HMGB3-203ENST00000430118 SMCHD1A6NHR9 2005 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 A0A087WUV0 522 aaPredicted RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 A0A1B0GUA9 196 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 A0A1W2PPM1 405 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 A4D1N5 150 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 FAM90A26D6RGX4 464 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SLC33A1O00400 549 aaPredicted RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 CLDN4O14493 209 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 HSPA12AO43301 675 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 DIAPH2O60879 1101 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 RTN2O75298 545 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF217O75362 1048 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE7O76087 117 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZWINTO95229 277 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 VIMP08670 466 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 RAB40ALP0C0E4 278 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE12FP0CL80 117 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE12GP0CL81 117 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE12IP0CL82 117 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 H2AFXP16104 143 aaPredicted RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 PDGFRAP16234 1089 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 NMBRP28336 390 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 EIF2S3P41091 472 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 CASP3P42574 277 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SNU13P55769 128 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SLC8A3P57103 927 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SEC61BP60468 96 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF91Q05481 1191 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 DPTQ07507 201 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE1Q13065 139 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 GAGE4Q13068 117 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 MTX1Q13505 466 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 LAMB3Q13751 1172 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 NFE2L1Q14494 772 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SMC1AQ14683 1233 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ANGPT1Q15389 498 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF284Q2VY69 593 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 FAM174BQ3ZCQ3 159 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF789Q5FWF6 425 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 C10orf25Q5T742 122 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 DCAF12L2Q5VW00 463 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 FAM91A1Q658Y4 838 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 PRR27Q6MZM9 219 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 TMCO2Q7Z6W1 182 aaPredicted RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 DSG4Q86SJ6 1040 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 KIAA1328Q86T90 577 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 HSCBQ8IWL3 235 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 TUSC5Q8IXB3 177 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF595Q8IYB9 648 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 RASGEF1CQ8N431 466 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 PCDH20Q8N6Y1 951 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 TMEM105Q8N8V8 129 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 NAT8LQ8N9F0 302 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 BOLLQ8N9W6 283 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 CTCFLQ8NI51 663 aaPredicted RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 WDR20Q8TBZ3 569 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 KIAA1524Q8TCG1 905 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 MIPOL1Q8TD10 442 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 CHURC1Q8WUH1 139 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 DNASE1L2Q92874 299 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 P2RX5Q93086 422 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 TOP1MTQ969P6 601 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 HES6Q96HZ4 224 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF558Q96NG5 402 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 MUS81Q96NY9 551 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 FAM129AQ9BZQ8 928 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 API5Q9BZZ5 524 aaKnown RBP3.94□□□□□ -1.78
HMGB3-203ENST00000430118 PRSS22Q9GZN4 317 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 VPS18Q9P253 973 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 CLIP2Q9UDT6 1046 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 RIPK3Q9Y572 518 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 NFS1Q9Y697 457 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 SCN5AQ14524 2016 aa3.94□□□□□ -1.78
HMGB3-203ENST00000430118 ZNFX1Q9P2E3 1918 aaKnown RBP3.93□□□□□ -1.78
HMGB3-203ENST00000430118 TECTAO75443 2155 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 SMIM35A0A1B0GVV1 85 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 A0A1W2PPQ1 181 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 LRRC3CA6NJW4 275 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 RSPH10B2B2RC85 870 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 F5H6K3 240 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 MATN3O15232 486 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 ITM2AO43736 263 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 ERLIN1O75477 346 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 MBD3O95983 291 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 NDUFB10O96000 172 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 MT-ND3P03897 115 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 OR52Z1P0C646 297 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 RSPH10BP0C881 870 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 G6PDP11413 515 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 NAGAP17050 411 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 HOXB8P17481 243 aaPredicted RBP3.93□□□□□ -1.78
HMGB3-203ENST00000430118 AOC1P19801 751 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 HRH2P25021 359 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 BDKRB2P30411 391 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 SOAT1P35610 550 aa3.93□□□□□ -1.78
HMGB3-203ENST00000430118 PIGAP37287 484 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms