RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 HSFX1Q9UBD0 423 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 HEMK1Q9Y5R4 338 aaPredicted RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 TMEM221A6NGB7 291 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 M0R296 226 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 SLC7A4O43246 635 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 SNNO75324 88 aaPredicted RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 GSSP48637 474 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 AFF3P51826 1226 aaKnown RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 HTRA4P83105 476 aaPredicted RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 GALNT2Q10471 571 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 FOXB2Q5VYV0 432 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 GPRIN3Q6ZVF9 776 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 BEND5Q7L4P6 421 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 ZC3HC1Q86WB0 502 aaKnown RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 CBR4Q8N4T8 237 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 FBXO30Q8TB52 745 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 DNASE1L2Q92874 299 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 APOLD1Q96LR9 279 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 WDR83Q9BRX9 315 aaKnown RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 RAB11FIP5Q9BXF6 653 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 LTB4R2Q9NPC1 389 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 PNO1Q9NRX1 252 aaKnown RBP10.37□□□□□ -0.75
TCOF1-204ENST00000427724 COPS7AQ9UBW8 275 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 POLR1DQ9Y2S0 133 aa10.37□□□□□ -0.75
TCOF1-204ENST00000427724 OR6C74A6NCV1 312 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 H3BNX3 289 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FBP2O00757 339 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 RGS5O15539 181 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 PIM1P11309 404 aaPredicted RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 RPL38P63173 70 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FOXC1Q12948 553 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 MAD2L1Q13257 205 aaPredicted RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ZCCHC8Q6NZY4 707 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 C16orf62Q7Z3J2 963 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 SPEM1Q8N4L4 309 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 OR9I1Q8NGQ6 314 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 C19orf60Q96EN9 201 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ZNF778Q96MU6 729 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 REXO4Q9GZR2 422 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 EXOSC4Q9NPD3 245 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 RARRES3Q9UL19 164 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 SPAG17Q6Q759 2223 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 A0A1W2PPW3 197 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 TOR1BO14657 336 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ALOX12P18054 663 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 PLGLB1Q02325 96 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FAM98BQ52LJ0 330 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ABRAXAS1Q6UWZ7 409 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 Q6ZS52 159 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FAM92BQ6ZTR7 304 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 POC5Q8NA72 575 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ZDHHC1Q8WTX9 485 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 TSSK3Q96PN8 268 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CEP44Q9C0F1 390 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 TCRBV5S1A1TA0A578 114 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 E7ENX8 843 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 POLR1CO15160 346 aaPredicted RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ZNF12P17014 697 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 RPL26P61254 145 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 STXBP1P61764 594 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 TSNQ15631 228 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 SUSD1Q6UWL2 747 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 TSPAN33Q86UF1 283 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FBXL6Q8N531 539 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 SMPDL3AQ92484 453 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 EXOSC8Q96B26 276 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ARRDC3Q96B67 414 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ASB2Q96Q27 587 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 UBXN8O00124 270 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 GSNP06396 782 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CDK4P11802 303 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CDH2P19022 906 aaPredicted RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CPN2P22792 545 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 FAM214AQ32MH5 1076 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 PLXDC1Q8IUK5 500 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 P3H2Q8IVL5 708 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CPXM2Q8N436 756 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 PTCD2Q8WV60 388 aaKnown RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 CMKLR1Q99788 373 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 ZNF556Q9HAH1 456 aa10.36□□□□□ -0.75
TCOF1-204ENST00000427724 H2AFY2Q9P0M6 372 aaPredicted RBP10.36□□□□□ -0.75
TCOF1-204ENST00000427724 RRP8O43159 456 aaKnown RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 B4GALT3O60512 393 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 TRBC1P01850 177 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MANFP55145 182 aaKnown RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 RAB8AP61006 207 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 IL5RAQ01344 420 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MSANTD3Q96H12 275 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 EDEM2Q9BV94 578 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 GTF2A1LQ9UNN4 478 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 CAPN14A8MX76 684 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 H3BNH8 94 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 MLYCDO95822 493 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 AK4P27144 223 aaPredicted RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 OTX2P32243 289 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 BDKRB1P46663 353 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 POLD2P49005 469 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 ARPC4P59998 168 aa10.35□□□□□ -0.75
TCOF1-204ENST00000427724 NRG1Q02297 640 aaPredicted RBP10.35□□□□□ -0.75
TCOF1-204ENST00000427724 BIKQ13323 160 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms