RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 E7ESA3 106 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CTSVO60911 334 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 AVILO75366 819 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 SNRPB2P08579 225 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 MGAT1P26572 445 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 PSMB5P28074 263 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 ECHS1P30084 290 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 TSFMP43897 325 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CACNG1Q06432 222 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 SLC5A12Q1EHB4 618 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CCSMST1Q4G0I0 132 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 DNAJC21Q5F1R6 531 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CENPUQ71F23 418 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 NLRP9Q7RTR0 991 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 OVCH1Q7RTY7 1134 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 LDB1Q86U70 411 aaPredicted RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 MCEMP1Q8IX19 187 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 TBC1D21Q8IYX1 336 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 OR11G2Q8NGC1 345 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CFAP61Q8NHU2 1237 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 TM9SF4Q92544 642 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 THOC3Q96J01 351 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 SLX1AQ9BQ83 275 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CHRNA10Q9GZZ6 450 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 MRM3Q9HC36 420 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 CUTCQ9NTM9 273 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 OR6C2Q9NZP2 312 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 ENTPD4Q9Y227 616 aa12.34□□□□□ -0.43
LINC00339-202ENST00000416769 RUVBL2Q9Y230 463 aaKnown RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 V9GYY5 206 aaPredicted RBP12.34□□□□□ -0.43
LINC00339-202ENST00000416769 HEATR9A2RTY3 570 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 H7C0S8 307 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 LIN7AO14910 233 aaPredicted RBP12.33□□□□□ -0.44
LINC00339-202ENST00000416769 HNRNPRO43390 633 aaKnown RBP12.33□□□□□ -0.44
LINC00339-202ENST00000416769 IPO13O94829 963 aaKnown RBP12.33□□□□□ -0.44
LINC00339-202ENST00000416769 AP2A2O94973 939 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 PSMA3P25788 255 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 CCR7P32248 378 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 TDGF1P3P51864 188 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 SNRPNP63162 240 aaKnown RBP12.33□□□□□ -0.44
LINC00339-202ENST00000416769 DHX9Q08211 1270 aaKnown RBP12.33□□□□□ -0.44
LINC00339-202ENST00000416769 BBS9Q3SYG4 887 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 MSS51Q4VC12 460 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 SYTL3Q4VX76 610 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 AGAP7PQ5VUJ5 663 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 FRMPD2BQ6IN97 320 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 KRT222Q8N1A0 295 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 STYXQ8WUJ0 223 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 HEXDCQ8WVB3 486 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 PEX13Q92968 403 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 ZNF778Q96MU6 729 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 PWWP2AQ96N64 755 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 AGAP4Q96P64 663 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 PHF12Q96QT6 1004 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 C17orf62Q9BQA9 187 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 NAT9Q9BTE0 207 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 KIFC1Q9BW19 673 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 PARD6BQ9BYG5 372 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 VPS37BQ9H9H4 285 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 ZNF160Q9HCG1 818 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 SYBUQ9NX95 663 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 RAB21Q9UL25 225 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 NFU1Q9UMS0 254 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 SOX13Q9UN79 622 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 TCAF1Q9Y4C2 921 aa12.33□□□□□ -0.44
LINC00339-202ENST00000416769 CELSR1Q9NYQ6 3014 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 LOC105369274A0A096LPK9 316 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 LOC102723532A0A0G2JNH3 316 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 FAM237BA0A1B0GVD1 139 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 MROH6A6NGR9 719 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 DSCR3O14972 297 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 CTIFO43310 598 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 EDN3P14138 238 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 ELAVL4P26378 380 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 BDKRB1P46663 353 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 ST13P50502 369 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 EFNA3P52797 238 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 PDIA2Q13087 525 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 NAA30Q147X3 362 aaPredicted RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 KIR2DS3Q14952 304 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 RBBP7Q16576 425 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 TUBB8Q3ZCM7 444 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 ZNF324BQ6AW86 544 aaPredicted RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 LAPTM4BQ86VI4 370 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 RELL1Q8IUW5 271 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 OR4N4Q8N0Y3 316 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 PPHLN1Q8NEY8 458 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 MYRIPQ8NFW9 859 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 OR1N1Q8NGS0 311 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 OR13J1Q8NGT2 312 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 FKBP10Q96AY3 582 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 MAGEB10Q96LZ2 347 aaPredicted RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 FMO2Q99518 471 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 EBNA1BP2Q99848 306 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 LHPPQ9H008 270 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 CHRAC1Q9NRG0 131 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 OLAHQ9NV23 265 aa12.32□□□□□ -0.44
LINC00339-202ENST00000416769 TSR3Q9UJK0 312 aaKnown RBP12.32□□□□□ -0.44
LINC00339-202ENST00000416769 TEX264Q9Y6I9 313 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms