RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 IGFL2Q6UWQ7 119 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 CAND1Q86VP6 1230 aaKnown RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 PAQR7Q86WK9 346 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 DENND6AQ8IWF6 608 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 SIRT6Q8N6T7 355 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 PRELID2Q8N945 189 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 GIMAP7Q8NHV1 300 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 PLCD4Q9BRC7 762 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 PTGFRNQ9P2B2 879 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 TRPC4Q9UBN4 977 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 ZNF282Q9UDV7 671 aaPredicted RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 NXT1Q9UKK6 140 aaKnown RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 MRPS2Q9Y399 296 aaKnown RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 KLK4Q9Y5K2 254 aa11.02□□□□□ -0.65
USP4-204ENST00000416417 RP1L1Q8IWN7 2480 aaPredicted RBP11.02□□□□□ -0.65
USP4-204ENST00000416417 A0A0A6YYC8 382 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 E5RI56 91 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 I3L1I5 382 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 MAP2K7O14733 419 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 HAT1O14929 419 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 P2RX6O15547 441 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 LRRTM2O43300 516 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 KLHL41O60662 606 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 HPP00738 406 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ESR1P03372 595 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 COX6A1P12074 109 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 PKMP14618 531 aaKnown RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 TPSB2P20231 275 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 EMP2P54851 167 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 MAT1AQ00266 395 aaKnown RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 CTBP1Q13363 440 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 TPSAB1Q15661 275 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 MUM1Q2TAK8 710 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ANKRD20A4Q4UJ75 823 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ATG9BQ674R7 924 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 B3GNTL1Q67FW5 361 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 ZNF470Q6ECI4 717 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 NEPROQ6NW34 567 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ZNF549Q6P9A3 640 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ISLR2Q6UXK2 745 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ADCK2Q7Z695 626 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 REXO1L1PQ8IX06 675 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 CSNK1A1LQ8N752 337 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ST6GALNAC3Q8NDV1 305 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 OR1N1Q8NGS0 311 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 MAGEC3Q8TD91 643 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 BRIX1Q8TDN6 353 aaKnown RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 SMPDL3AQ92484 453 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ZNF669Q96BR6 464 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 MMABQ96EY8 250 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 MS4A14Q96JA4 679 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 MAGEB10Q96LZ2 347 aaPredicted RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 MACROD1Q9BQ69 325 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 EPS8L2Q9H6S3 715 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 ENAMQ9NRM1 1142 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 AGPAT4Q9NRZ5 378 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 PCYOX1Q9UHG3 505 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 SPTBN1Q01082 2364 aaKnown RBP11.01□□□□□ -0.65
USP4-204ENST00000416417 PCM1Q15154 2024 aa11.01□□□□□ -0.65
USP4-204ENST00000416417 NSG1A0A0A6YYJ2 146 aa11□□□□□ -0.65
USP4-204ENST00000416417 IDSB3KWA1 339 aa11□□□□□ -0.65
USP4-204ENST00000416417 MYO1CO00159 1063 aa11□□□□□ -0.65
USP4-204ENST00000416417 FOXS1O43638 330 aa11□□□□□ -0.65
USP4-204ENST00000416417 PSIP1O75475 530 aaKnown RBP11□□□□□ -0.65
USP4-204ENST00000416417 JRKO75564 520 aa11□□□□□ -0.65
USP4-204ENST00000416417 USP1O94782 785 aa11□□□□□ -0.65
USP4-204ENST00000416417 FKBP9O95302 570 aa11□□□□□ -0.65
USP4-204ENST00000416417 SLC16A8O95907 504 aa11□□□□□ -0.65
USP4-204ENST00000416417 KRT14P02533 472 aa11□□□□□ -0.65
USP4-204ENST00000416417 ERGP11308 486 aa11□□□□□ -0.65
USP4-204ENST00000416417 CLCN7P51798 805 aa11□□□□□ -0.65
USP4-204ENST00000416417 PNLIPRP1P54315 467 aa11□□□□□ -0.65
USP4-204ENST00000416417 MFAP5Q13361 173 aa11□□□□□ -0.65
USP4-204ENST00000416417 DHX34Q14147 1143 aaKnown RBP11□□□□□ -0.65
USP4-204ENST00000416417 ICE2Q659A1 982 aa11□□□□□ -0.65
USP4-204ENST00000416417 KIAA0930Q6ICG6 404 aaPredicted RBP11□□□□□ -0.65
USP4-204ENST00000416417 PRMT9Q6P2P2 845 aa11□□□□□ -0.65
USP4-204ENST00000416417 C4orf22Q6V702 233 aa11□□□□□ -0.65
USP4-204ENST00000416417 CILP2Q8IUL8 1156 aa11□□□□□ -0.65
USP4-204ENST00000416417 AGGF1Q8N302 714 aaeCLIP11□□□□□ -0.65
USP4-204ENST00000416417 AMER3Q8N944 861 aa11□□□□□ -0.65
USP4-204ENST00000416417 ZNF480Q8WV37 535 aa11□□□□□ -0.65
USP4-204ENST00000416417 PSMF1Q92530 271 aa11□□□□□ -0.65
USP4-204ENST00000416417 NACC2Q96BF6 587 aa11□□□□□ -0.65
USP4-204ENST00000416417 MED16Q9Y2X0 877 aa11□□□□□ -0.65
USP4-204ENST00000416417 MRFAP1Q9Y605 127 aa11□□□□□ -0.65
USP4-204ENST00000416417 CROCCQ5TZA2 2017 aa11□□□□□ -0.65
USP4-204ENST00000416417 ANKRD12Q6UB98 2062 aa11□□□□□ -0.65
USP4-204ENST00000416417 CELSR2Q9HCU4 2923 aa11□□□□□ -0.65
USP4-204ENST00000416417 CRYBG3Q68DQ2 2970 aa11□□□□□ -0.65
USP4-204ENST00000416417 IGHV3-20A0A0C4DH32 117 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 CTAGE9A4FU28 777 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 OR2W5A6NFC9 320 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 H3BMM5 538 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 SMAPO00193 183 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 KIF5CO60282 957 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 CATP04040 527 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 HEXBP07686 556 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 PRR35P0CG20 571 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 OGNP20774 298 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms